Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 4.8e-136 488.0 281 100.0
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.8e-72 276.2 313 56.9
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 3.7e-72 275.8 268 62.3
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 9.5e-68 261.2 266 60.5
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 3.5e-54 216.1 273 51.3
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 8.9e-50 201.4 286 49.0
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 6.4e-48 195.3 287 47.7
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 4.1e-47 192.6 285 48.4
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.6e-46 190.7 275 48.4
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.7e-46 189.9 275 49.5
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.7e-45 187.2 280 45.4
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 2.3e-45 186.8 273 48.0
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 8.6e-45 184.9 288 46.5
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 2.5e-44 183.3 268 49.6
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 2.5e-44 183.3 277 47.7
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 4.3e-44 182.6 284 46.8
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 9.5e-44 181.4 286 45.8
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.6e-43 180.6 275 48.0
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.7e-40 170.6 290 43.1
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.7e-40 169.5 287 44.9
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 4.9e-40 169.1 274 48.2
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 6.4e-40 168.7 291 45.0
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.1e-39 167.9 263 48.7
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 9.2e-39 164.9 296 42.2
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.6e-38 164.1 272 47.1
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.9e-36 157.1 263 44.9
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 3.3e-36 156.4 277 45.1
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 4.3e-36 156.0 265 45.3
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.2e-35 154.5 292 40.1
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.6e-35 152.9 273 42.5
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.7e-35 152.5 276 42.0
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 8.1e-35 151.8 246 46.3
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.1e-34 149.8 292 39.4
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 4.0e-34 149.4 267 44.6
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 4.4e-33 146.0 273 41.0
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 2.2e-32 143.7 273 42.5
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 8.4e-32 141.7 280 41.4
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.9e-31 140.6 273 41.0
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 1.9e-31 140.6 274 40.9
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 3.2e-31 139.8 274 40.5
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.1e-31 139.4 262 44.3
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 9.2e-31 138.3 311 40.2
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 1.2e-30 137.9 301 38.9
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 2.1e-30 137.1 266 42.1
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 3.5e-30 136.3 276 42.0
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 4.6e-30 136.0 283 42.4
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.3e-29 134.4 214 47.2
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 3.9e-29 132.9 260 41.9
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 1.5e-28 131.0 283 38.5
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 1.9e-28 130.6 306 38.6
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 3.3e-28 129.8 259 41.3
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 7.3e-28 128.6 250 42.8
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 2.8e-27 126.7 185 49.2
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 8.1e-27 125.2 164 51.2
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.8e-26 124.0 282 38.7
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 2.4e-26 123.6 193 47.7
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 6.9e-26 122.1 324 39.2
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.2e-25 121.3 305 36.1
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.7e-24 117.5 262 44.3
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 2.2e-24 117.1 159 52.8
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.9e-24 115.9 123 58.5
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 1.1e-23 114.8 153 51.6
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 1.9e-23 114.0 294 36.7
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 3.2e-23 113.2 266 35.7
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 7.1e-23 112.1 282 36.2
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 1.6e-22 110.9 235 41.3
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 2.7e-22 110.2 270 35.9
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 2.7e-22 110.2 270 35.2
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 4.6e-22 109.4 153 51.0
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 7.8e-22 108.6 250 41.2
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.0e-21 108.2 125 53.6
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 2.3e-21 107.1 261 36.8
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 3.0e-21 106.7 315 33.0
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.0e-21 106.7 265 36.6
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 1.5e-20 104.4 162 51.9
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 1.5e-20 104.4 156 48.7
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 1.5e-20 104.4 149 50.3
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 4.3e-20 102.8 120 54.2
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 4.3e-20 102.8 276 38.8
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 9.6e-20 101.7 271 36.5
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.6e-19 100.9 275 36.7
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 3.6e-19 99.8 171 46.2
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 4.8e-19 99.4 115 53.9
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 4.8e-19 99.4 297 37.7
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 1.4e-18 97.8 108 53.7
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 3.1e-18 96.7 214 41.6
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 5.3e-18 95.9 227 41.4
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 6.9e-18 95.5 266 35.0
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 9.0e-18 95.1 291 40.9
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 1.5e-17 94.4 263 33.1
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 2.6e-17 93.6 175 45.7
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 2.6e-17 93.6 140 45.0
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 5.8e-17 92.4 148 44.6
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 1.3e-16 91.3 100 60.0
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.3e-16 91.3 141 46.1
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 6.4e-16 89.0 156 42.3
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 6.4e-16 89.0 125 49.6
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 8.4e-16 88.6 155 45.2
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.1e-15 88.2 256 33.6
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 1.4e-15 87.8 175 42.9
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 1.4e-15 87.8 175 42.9
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 1.4e-15 87.8 273 34.4
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 1.9e-15 87.4 78 64.1
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 3.2e-15 86.7 113 53.1
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 4.2e-15 86.3 275 33.8
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 4.2e-15 86.3 275 33.5
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 5.4e-15 85.9 170 42.9
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 5.4e-15 85.9 233 36.9
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 5.4e-15 85.9 279 33.7
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 7.1e-15 85.5 261 35.2
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 9.3e-15 85.1 162 43.2
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 9.3e-15 85.1 144 44.4
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 1.6e-14 84.3 147 46.9
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 2.1e-14 84.0 75 64.0
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 4.6e-14 82.8 120 49.2
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 4.6e-14 82.8 71 66.2
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 4.6e-14 82.8 71 66.2
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 1.0e-13 81.6 73 61.6
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 1.3e-13 81.3 265 34.7
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 1.8e-13 80.9 271 32.5
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 3.0e-13 80.1 321 31.8
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.1e-12 78.2 153 43.8
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 2.5e-12 77.0 251 35.9
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 3.3e-12 76.6 69 63.8
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 5.6e-12 75.9 65 66.2
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 5.6e-12 75.9 266 30.8
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 9.6e-12 75.1 65 64.6
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 9.6e-12 75.1 87 51.7
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 1.3e-11 74.7 263 32.3
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 2.8e-11 73.6 141 41.8
Ca_11442_v3 Cicer arietinum L. HOM05D004973 ORTHO05D006119 1.4e-10 71.2 278 31.3
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 1.8e-10 70.9 249 34.1
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 1.8e-10 70.9 108 47.2
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 1.2e-09 68.2 86 47.7
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 2.6e-09 67.0 216 37.0
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 4.5e-09 66.2 63 54.0
Ah.15g091990 Amaranthus hybridus HOM05D004973 ORTHO05D006119 7.6e-09 65.5 264 29.9
PGSC0003DMG400002023 Solanum tuberosum HOM05D004973 ORTHO05D006119 9.9e-09 65.1 69 49.3
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 1.3e-08 64.7 46 71.7
PGSC0003DMG400018718 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.3e-08 64.7 80 46.2
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 4.9e-08 62.8 224 33.5


User provided reference genes

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