Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 1.6e-128 464.2 231 100.0
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 8.4e-85 318.9 231 70.1
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 9.6e-81 305.4 197 78.2
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 2.1e-80 304.3 198 77.8
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.8e-74 284.6 231 58.4
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 4.6e-67 260.0 231 58.0
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 6.3e-64 249.6 301 49.5
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 3.1e-63 247.3 225 57.8
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 1.2e-62 245.4 195 63.6
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.6e-62 244.2 224 58.5
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.5e-62 243.4 224 58.5
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 5.9e-62 243.0 231 54.5
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 6.5e-61 239.6 211 60.7
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 8.4e-61 239.2 210 61.0
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 2.1e-59 234.6 233 51.9
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 7.9e-59 232.6 231 52.4
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.3e-58 231.9 231 52.4
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 2.3e-58 231.1 211 57.8
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 2.3e-58 231.1 193 61.1
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 1.5e-57 228.4 209 56.0
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.9e-57 228.0 231 53.2
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 4.3e-57 226.9 197 60.4
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.6e-56 224.9 204 55.4
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 4.8e-56 223.4 240 50.0
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 9.0e-55 219.2 229 52.4
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 1.2e-54 218.8 223 49.8
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 4.5e-54 216.9 191 61.3
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 5.9e-54 216.5 204 54.4
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.2e-53 214.5 209 56.0
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 5.0e-53 213.4 175 63.4
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 2.5e-52 211.1 232 51.7
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 7.2e-52 209.5 232 51.3
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.2e-51 208.8 201 56.2
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 4.6e-51 206.8 228 50.9
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 4.6e-51 206.8 231 51.1
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 5.1e-50 203.4 180 60.6
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 5.1e-50 203.4 204 53.4
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 6.7e-50 203.0 182 59.3
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.3e-49 200.7 227 48.5
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 1.3e-48 198.7 231 47.6
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.7e-48 198.4 227 48.0
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 2.2e-48 198.0 233 48.1
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 2.8e-48 197.6 231 45.9
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.1e-47 195.7 232 47.0
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.4e-47 195.3 227 47.6
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 1.4e-47 195.3 199 50.8
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 2.4e-47 194.5 194 52.1
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.0e-46 191.4 234 43.6
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 3.4e-46 190.7 258 44.2
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 3.4e-46 190.7 204 53.9
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 3.8e-45 187.2 225 48.0
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 5.0e-45 186.8 231 46.3
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 8.5e-45 186.0 164 59.1
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.1e-44 185.7 235 46.4
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 1.2e-43 182.2 229 45.4
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.7e-43 181.0 232 44.4
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.7e-43 181.0 234 42.7
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 4.7e-43 180.3 210 51.0
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 6.1e-43 179.9 234 41.9
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 7.9e-43 179.5 175 52.6
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 5.1e-42 176.8 209 50.2
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 5.1e-42 176.8 233 41.2
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 9.7e-41 172.6 199 46.2
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 4.8e-40 170.2 198 45.5
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 1.1e-39 169.1 204 46.6
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.4e-39 168.7 173 52.0
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 3.1e-39 167.5 200 46.0
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 7.0e-39 166.4 207 45.9
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.0e-38 164.9 232 39.7
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 5.9e-38 163.3 197 47.7
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 1.0e-37 162.5 209 44.5
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 1.7e-37 161.8 229 41.9
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 2.9e-37 161.0 220 41.8
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 3.8e-37 160.6 232 36.6
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 1.5e-36 158.7 232 38.4
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 7.2e-36 156.4 229 40.6
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 1.2e-35 155.6 235 39.6
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 1.2e-35 155.6 216 39.4
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.0e-34 152.5 151 55.6
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 1.4e-34 152.1 212 42.5
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 8.8e-34 149.4 199 40.7
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.1e-33 149.1 208 44.2
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 4.4e-33 147.1 232 35.3
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 7.5e-33 146.4 182 42.3
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 9.7e-33 146.0 184 39.7
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 9.7e-33 146.0 163 46.6
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.3e-32 145.6 134 56.0
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.2e-32 144.8 238 36.6
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 2.2e-32 144.8 208 42.3
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.8e-32 144.4 207 42.5
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 2.8e-32 144.4 203 42.4
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 1.1e-31 142.5 232 34.5
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 2.4e-31 141.4 230 37.4
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 3.1e-31 141.0 230 37.4
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 4.1e-31 140.6 232 36.6
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 7.0e-31 139.8 200 40.0
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 3.5e-30 137.5 122 59.8
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 5.9e-30 136.7 212 38.2
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 5.9e-30 136.7 190 40.5
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.2e-29 134.8 117 59.8
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 1.9e-28 131.7 209 38.3
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 2.5e-28 131.3 214 38.8
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 3.2e-28 131.0 211 35.1
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 4.2e-28 130.6 208 40.9
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 5.5e-28 130.2 206 40.8
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 5.5e-28 130.2 208 40.4
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 7.2e-28 129.8 206 41.3
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 9.4e-28 129.4 176 40.9
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 9.4e-28 129.4 179 37.4
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 1.2e-27 129.0 206 40.8
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 1.6e-27 128.6 200 41.5
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 2.7e-27 127.9 203 39.9
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.7e-27 127.9 179 36.9
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 3.6e-27 127.5 206 40.3
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 3.6e-27 127.5 195 44.6
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 4.7e-27 127.1 233 37.3
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 6.1e-27 126.7 206 40.3
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 1.0e-26 125.9 228 37.7
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.0e-26 125.9 127 50.4
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 1.4e-26 125.6 120 52.5
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.4e-26 125.6 214 37.9
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 3.0e-26 124.4 232 34.5
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 2.0e-25 121.7 102 60.8
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 2.0e-25 121.7 205 35.6
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 4.4e-25 120.6 233 33.5
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 5.7e-25 120.2 203 32.0
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.7e-24 117.5 140 46.4
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 2.4e-23 114.8 207 34.3
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 3.1e-23 114.4 234 33.3
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 9.1e-23 112.8 207 34.3
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 7.7e-22 109.8 121 48.8
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.0e-21 109.4 176 34.7
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.3e-21 109.0 107 53.3
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 2.9e-21 107.8 206 33.0
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 5.0e-21 107.1 225 34.7
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 6.5e-21 106.7 80 62.5
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 1.5e-20 105.5 222 32.4
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 4.7e-19 100.5 119 43.7
CANSAT21G1589 Cannabis sativa HOM05D004255 ORTHO05D004815 6.1e-19 100.1 80 56.2
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 4.0e-18 97.4 181 28.7
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 5.7e-17 93.6 166 39.2
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 8.3e-16 89.7 70 64.3
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 3.5e-14 84.3 60 61.7
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 3.5e-14 84.3 56 73.2
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 4.5e-14 84.0 216 27.3
CANSAT11G1641 Cannabis sativa HOM05D004255 ORTHO05D004815 7.7e-14 83.2 64 57.8
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 1.3e-13 82.4 88 45.5
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 2.3e-13 81.6 99 44.4
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 5.6e-12 77.0 180 30.6
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 9.5e-12 76.3 169 34.3
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.6e-11 75.5 143 32.2
CiPaw.03G073600 Carya illinoinensis HOM05D007545 ORTHO05D009579 4.0e-10 70.9 173 28.3
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 4.0e-10 70.9 60 55.0
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 1.5e-09 68.9 220 23.6
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 2.0e-09 68.6 211 27.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.4e-09 67.8 230 27.0
Dinv32694 Davidia involucrata HOM05D004255 ORTHO05D004815 7.5e-09 66.6 59 54.2
Ah.04g165440 Amaranthus hybridus HOM05D007639 ORTHO05D009509 1.3e-08 65.9 181 29.3
ATR1136G126 Amborella trichopoda HOM05D004255 ORTHO05D004815 1.3e-08 65.9 102 37.3
AUR62029220 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.7e-08 65.5 100 36.0
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 1.7e-08 65.5 94 35.1
FvH4_2g40380 Fragaria vesca HOM05D007639 ORTHO05D009509 4.9e-08 63.9 180 27.8
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 4.9e-08 63.9 214 25.7
Sed0007352 Sechium edule HOM05D007639 ORTHO05D009509 4.9e-08 63.9 170 29.4
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 8.3e-08 63.2 226 27.9
HanXRQChr14g0457331 Helianthus annuus HOM05D007545 ORTHO05D009579 1.1e-07 62.8 220 22.7
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 1.1e-07 62.8 214 24.8
PSO675G4860 Papaver somniferum HOM05D007639 ORTHO05D009509 1.1e-07 62.8 167 28.7
MBI16_g10987_MAGBIO Magnolia biondii HOM05D007639 ORTHO05D009509 1.2e-06 59.3 168 28.6
PSO541G4055 Papaver somniferum HOM05D007639 ORTHO05D009509 1.2e-06 59.3 172 27.9
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 1.6e-06 58.9 211 26.1
Sed0025332 Sechium edule HOM05D007455 ORTHO05D009431 1.6e-06 58.9 103 33.0
Gohir.D05G106066 Gossypium hirsutum HOM05D004255 ORTHO05D004815 2.0e-06 58.5 128 32.8
RcHm_v2.0_Chr6g0300361 Rosa chinensis HOM05D007639 ORTHO05D009509 3.5e-06 57.8 180 26.7
Cpa.g.sc207.2 Carica papaya HOM05D007639 ORTHO05D009509 4.6e-06 57.4 154 29.9
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 4.6e-06 57.4 212 27.4
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 4.6e-06 57.4 189 23.3
GSVIVG01036486001 Vitis vinifera HOM05D007347 ORTHO05D009296 4.6e-06 57.4 150 29.3
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 5.9e-06 57.0 220 24.5
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 5.9e-06 57.0 206 25.7
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 7.8e-06 56.6 235 25.1


User provided reference genes

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