Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 3.6e-161 571.6 309 100.0
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.7e-142 509.6 309 87.4
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 2.5e-138 495.7 311 84.9
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 4.7e-137 491.5 309 84.5
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 2.3e-136 489.2 309 84.8
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 4.0e-136 488.4 309 84.8
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 4.0e-136 488.4 309 84.1
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 5.8e-135 484.6 309 83.2
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 7.6e-135 484.2 317 81.4
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.9e-134 482.3 317 81.4
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 1.1e-133 480.3 309 82.2
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.4e-133 479.9 309 81.9
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.4e-133 479.9 309 81.2
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.4e-133 479.9 309 80.9
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 2.4e-133 479.2 309 83.5
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.3e-131 473.4 309 81.9
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 3.9e-131 471.9 316 78.5
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 3.9e-131 471.9 316 78.5
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 3.9e-131 471.9 309 82.2
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 8.6e-131 470.7 309 81.6
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.5e-130 469.2 308 80.8
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 2.5e-130 469.2 309 80.3
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 3.3e-130 468.8 308 80.5
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.3e-130 468.8 309 79.9
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 4.3e-130 468.4 309 79.3
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 4.3e-130 468.4 309 81.2
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 9.6e-130 467.2 309 79.9
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.2e-129 466.8 309 79.9
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.2e-129 466.8 309 80.3
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.6e-129 466.5 309 80.6
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.6e-129 466.5 309 80.3
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 2.1e-129 466.1 309 80.3
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 2.1e-129 466.1 309 80.3
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 3.6e-129 465.3 309 80.6
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.4e-128 463.4 309 80.3
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.8e-128 463.0 309 79.3
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.1e-128 462.2 317 78.5
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 4.0e-128 461.8 309 79.3
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 7.6e-127 457.6 316 77.8
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.3e-126 456.8 318 77.4
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 3.8e-126 455.3 310 78.1
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 4.9e-126 454.9 315 76.2
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.9e-126 454.9 317 77.0
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 4.9e-126 454.9 317 76.7
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 6.4e-126 454.5 309 78.6
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.1e-125 453.8 309 79.3
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.1e-125 453.8 309 78.3
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.4e-125 452.6 317 76.7
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 9.3e-125 450.7 317 75.4
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.2e-124 450.3 361 70.1
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.6e-124 449.9 318 76.1
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 2.1e-124 449.5 317 77.3
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.7e-124 449.1 309 77.3
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 4.6e-124 448.4 309 77.3
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 4.6e-124 448.4 310 78.4
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 4.6e-124 448.4 318 75.8
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 1.0e-123 447.2 317 74.8
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.3e-123 446.8 318 74.5
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 2.3e-123 446.0 309 78.3
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.0e-123 445.7 309 76.7
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 3.9e-123 445.3 318 75.2
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 5.1e-123 444.9 320 73.1
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 6.6e-123 444.5 309 78.3
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.9e-122 443.0 310 76.8
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 5.6e-122 441.4 309 76.1
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 5.6e-122 441.4 309 76.4
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 7.3e-122 441.0 317 72.9
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 1.6e-121 439.9 312 77.2
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 3.6e-121 438.7 309 76.1
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 3.6e-121 438.7 309 75.4
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.8e-121 438.3 309 74.4
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 1.8e-120 436.4 309 75.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.8e-120 436.4 317 72.6
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 2.4e-120 436.0 311 76.5
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 3.1e-120 435.6 309 74.4
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.2e-119 433.7 309 73.5
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.5e-119 433.3 309 77.7
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.5e-119 433.3 317 72.2
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.6e-119 432.6 310 73.9
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 3.4e-119 432.2 320 72.2
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 4.4e-119 431.8 310 75.2
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 4.4e-119 431.8 262 87.4
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.7e-118 429.9 344 68.9
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.1e-117 427.2 309 74.8
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 3.2e-117 425.6 311 72.7
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.6e-116 423.3 312 73.7
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 2.7e-116 422.5 310 72.6
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.5e-116 422.2 277 80.5
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.0e-115 420.6 310 72.9
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.0e-115 420.6 307 73.3
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.3e-115 419.5 311 74.0
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.9e-114 416.4 311 73.6
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 3.3e-114 415.6 284 78.9
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 3.6e-113 412.1 279 78.5
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.4e-112 409.5 298 74.8
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 9.0e-112 407.5 295 74.6
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 2.0e-111 406.4 295 74.6
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.6e-111 406.0 315 70.2
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 4.5e-111 405.2 295 74.2
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 7.6e-111 404.4 315 69.8
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 9.9e-111 404.1 316 69.3
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.9e-109 399.8 318 72.0
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.0e-107 394.0 280 75.4
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 2.3e-107 392.9 310 68.7
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 1.5e-106 390.2 287 73.9
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 4.3e-106 388.7 287 73.2
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 4.3e-106 388.7 320 65.3
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.8e-104 383.3 310 67.7
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.1e-104 382.5 262 77.1
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 8.4e-102 374.4 255 78.4
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 8.4e-102 374.4 309 69.9
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 5.5e-101 371.7 276 70.3
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.2e-100 370.5 309 68.6
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.3e-99 366.3 309 65.0
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 2.8e-97 359.4 256 75.0
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.8e-96 356.7 262 69.8
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 3.8e-94 349.0 315 63.2
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 4.2e-93 345.5 312 61.2
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.5e-90 336.3 309 61.8
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 2.4e-88 329.7 221 77.4
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.6e-87 326.2 227 75.3
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 2.2e-86 323.2 242 71.5
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 3.9e-83 312.4 310 57.1
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 7.7e-79 298.1 739 33.7
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.7e-75 285.0 390 49.5
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 3.5e-71 272.7 317 50.5
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.4e-67 260.8 319 48.3
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 2.3e-67 260.0 312 50.0
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.7e-60 236.5 288 49.3
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 1.2e-58 231.1 177 74.0
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 8.5e-54 214.9 183 67.8
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.3e-51 206.8 150 80.0
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 5.7e-50 202.2 259 52.1
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 7.7e-47 191.8 157 72.0
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 4.3e-45 186.0 120 85.8
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.8e-43 180.6 244 46.7
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 4.0e-43 179.5 143 69.2
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 2.0e-42 177.2 119 84.0
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 8.0e-36 155.2 260 45.0
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.0e-34 150.6 121 62.8
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 4.9e-33 146.0 91 83.5
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 4.1e-32 142.9 309 34.6
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 3.3e-29 133.3 127 64.6
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.6e-28 129.8 154 55.8
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 8.1e-28 128.6 110 64.5
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 2.0e-26 124.0 100 65.0
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 7.5e-26 122.1 86 80.2
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 3.2e-24 116.7 91 68.1
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.0e-22 110.2 89 61.8
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.8e-17 93.2 58 81.0
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.1e-14 82.8 56 73.2
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 8.6e-14 82.0 397 26.2
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 4.3e-13 79.7 84 57.1
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 2.7e-07 60.5 126 36.5
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 3.5e-07 60.1 36 75.0
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 5.1e-06 56.2 90 40.0


User provided reference genes

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