Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 6.5e-54 213.8 106 100.0
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 4.5e-47 191.0 106 87.7
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 5.9e-47 190.7 106 87.7
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 2.9e-46 188.3 105 88.6
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 2.9e-46 188.3 105 88.6
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 3.8e-46 188.0 105 87.6
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 1.1e-45 186.4 105 87.6
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 1.9e-45 185.7 106 86.8
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 3.2e-45 184.9 106 84.9
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 5.5e-45 184.1 106 83.0
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 7.2e-45 183.7 106 85.8
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 1.6e-44 182.6 106 83.0
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 3.6e-44 181.4 106 83.0
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 3.6e-44 181.4 105 82.9
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 1.0e-43 179.9 106 84.9
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 1.0e-43 179.9 105 81.9
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.0e-43 179.9 105 81.9
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 1.0e-43 179.9 105 83.8
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 1.4e-43 179.5 104 81.7
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 1.8e-43 179.1 106 79.2
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.8e-43 179.1 105 82.9
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 2.3e-43 178.7 105 81.9
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 2.3e-43 178.7 106 80.2
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 2.3e-43 178.7 106 81.1
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 3.0e-43 178.3 105 81.9
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 4.0e-43 177.9 105 81.0
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 8.8e-43 176.8 106 79.2
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.2e-42 176.4 105 81.0
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.0e-42 175.6 105 79.0
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.0e-42 175.6 105 80.0
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 2.0e-42 175.6 105 81.0
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 3.4e-42 174.9 106 84.0
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 3.4e-42 174.9 106 84.0
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 3.4e-42 174.9 104 83.7
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 4.4e-42 174.5 106 79.2
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 7.5e-42 173.7 105 81.0
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 7.5e-42 173.7 106 81.1
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 1.7e-41 172.6 105 78.1
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.7e-41 172.6 106 83.0
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.7e-41 172.6 105 78.1
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 1.7e-41 172.6 105 79.0
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 2.2e-41 172.2 105 81.0
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 8.3e-41 170.2 106 79.2
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 1.4e-40 169.5 105 77.1
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 1.4e-40 169.5 100 80.0
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.4e-40 169.5 105 79.0
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.8e-40 169.1 105 79.0
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 1.8e-40 169.1 105 78.1
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 1.8e-40 169.1 105 78.1
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 1.8e-40 169.1 106 80.2
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 2.4e-40 168.7 104 77.9
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.4e-40 168.7 105 79.0
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 2.4e-40 168.7 106 77.4
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 3.1e-40 168.3 106 78.3
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 3.1e-40 168.3 106 76.4
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 3.1e-40 168.3 105 77.1
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 4.1e-40 167.9 106 75.5
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 4.1e-40 167.9 105 77.1
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 4.1e-40 167.9 106 75.5
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 5.4e-40 167.5 106 78.3
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 5.4e-40 167.5 106 75.5
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 7.0e-40 167.2 103 78.6
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 9.2e-40 166.8 106 78.3
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 1.2e-39 166.4 106 77.4
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 2.0e-39 165.6 105 80.0
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 2.7e-39 165.2 103 77.7
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 3.5e-39 164.9 105 78.1
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 4.5e-39 164.5 103 76.7
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 5.9e-39 164.1 103 76.7
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 5.9e-39 164.1 103 76.7
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 5.9e-39 164.1 101 78.2
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 7.8e-39 163.7 105 74.3
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 7.8e-39 163.7 105 74.3
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.0e-38 163.3 105 73.3
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 2.3e-38 162.2 105 73.3
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 2.3e-38 162.2 103 75.7
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 2.3e-38 162.2 106 78.3
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 3.8e-38 161.4 105 72.4
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 6.6e-38 160.6 105 71.4
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 8.6e-38 160.2 105 72.4
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 8.6e-38 160.2 106 73.6
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 8.6e-38 160.2 105 72.4
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 1.1e-37 159.8 105 72.4
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 1.1e-37 159.8 105 72.4
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 2.5e-37 158.7 105 75.2
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 4.3e-37 157.9 106 74.5
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 9.5e-37 156.8 103 73.8
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 2.1e-36 155.6 103 72.8
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 2.8e-36 155.2 103 72.8
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 2.8e-36 155.2 105 71.4
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 1.2e-34 149.8 99 70.7
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 2.0e-34 149.1 105 67.6
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 3.4e-34 148.3 105 69.5
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 3.4e-34 148.3 104 68.3
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 9.8e-34 146.7 108 73.1
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 9.8e-34 146.7 104 67.3
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 1.3e-33 146.4 134 59.0
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.3e-33 146.4 105 65.7
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 4.9e-33 144.4 105 68.6
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 8.3e-33 143.7 105 67.6
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 4.1e-32 141.4 105 66.7
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 5.4e-32 141.0 92 75.0
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 3.5e-31 138.3 103 64.1
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 3.5e-31 138.3 133 54.9
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 1.3e-30 136.3 103 66.0
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 6.6e-30 134.0 94 68.1
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 2.5e-29 132.1 105 60.0
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 9.5e-29 130.2 76 85.5
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 8.0e-28 127.1 75 81.3
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 3.1e-27 125.2 104 57.7
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 3.1e-27 125.2 77 79.2
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 2.6e-26 122.1 100 58.0
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 7.5e-26 120.6 100 58.0
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 9.8e-26 120.2 99 57.6
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 9.8e-26 120.2 78 75.6
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.2e-24 115.2 70 82.9
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.1e-24 114.8 70 82.9
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 9.2e-24 113.6 76 72.4
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 9.2e-24 113.6 91 59.3
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 4.6e-23 111.3 106 60.4
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 6.0e-23 110.9 90 56.7
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 7.8e-23 110.5 96 55.2
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 1.1e-21 106.7 86 64.0
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 2.5e-21 105.5 75 65.3
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 5.6e-21 104.4 113 54.9
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 1.1e-19 100.1 105 53.3
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 1.4e-19 99.8 67 67.2
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 1.2e-18 96.7 79 60.8
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 1.7e-14 82.8 50 84.0
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 1.9e-13 79.3 82 58.5
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 2.5e-13 79.0 46 80.4
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 5.2e-11 71.2 86 41.9
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 5.8e-10 67.8 76 51.3
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.1e-08 63.5 42 64.3
ClCG10G020180 Citrullus lanatus HOM05D005747 ORTHO05D149649 5.1e-06 54.7 31 71.0


User provided reference genes

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