Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 7.4e-118 427.2 210 100.0
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 8.3e-101 370.5 204 89.7
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 7.2e-97 357.5 217 83.9
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 4.4e-94 348.2 200 84.5
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 6.3e-93 344.4 226 77.0
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 4.1e-92 341.7 227 77.5
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 7.0e-92 340.9 215 80.0
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 7.8e-91 337.4 222 79.3
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 1.0e-90 337.0 227 77.1
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 2.3e-90 335.9 226 77.4
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 8.6e-90 334.0 219 77.6
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 8.6e-90 334.0 207 80.7
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 1.1e-89 333.6 204 79.9
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 5.6e-89 331.3 219 76.3
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 1.6e-88 329.7 200 82.0
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 2.1e-88 329.3 207 81.6
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 2.8e-88 328.9 207 79.2
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 2.8e-88 328.9 208 81.2
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 1.0e-87 327.0 174 89.1
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 1.0e-87 327.0 189 83.6
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 1.4e-87 326.6 188 84.0
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 1.8e-87 326.2 191 82.2
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 1.8e-87 326.2 217 77.0
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 1.8e-87 326.2 200 81.0
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 2.3e-87 325.9 189 83.6
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 3.1e-87 325.5 253 68.8
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 3.1e-87 325.5 224 75.0
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 4.0e-87 325.1 226 75.2
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 6.8e-87 324.3 200 81.5
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 6.8e-87 324.3 175 88.0
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 8.9e-87 323.9 204 79.4
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 1.2e-86 323.6 181 86.2
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 1.2e-86 323.6 204 78.4
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 1.2e-86 323.6 181 83.4
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 2.6e-86 322.4 181 85.6
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 2.6e-86 322.4 201 80.1
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 5.8e-86 321.2 190 81.6
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 7.5e-86 320.9 221 75.1
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 7.5e-86 320.9 181 85.1
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 9.8e-86 320.5 175 88.0
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 9.8e-86 320.5 188 81.9
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 1.3e-85 320.1 222 73.4
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 2.9e-85 318.9 220 75.5
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 3.7e-85 318.5 204 77.0
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 3.7e-85 318.5 204 77.0
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 3.7e-85 318.5 200 79.0
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 3.7e-85 318.5 193 81.9
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 6.4e-85 317.8 186 83.3
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 2.4e-84 315.8 181 84.5
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 3.2e-84 315.5 210 76.2
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 4.1e-84 315.1 202 78.2
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 4.1e-84 315.1 184 83.7
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 5.4e-84 314.7 181 84.5
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 5.4e-84 314.7 193 78.8
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 7.0e-84 314.3 194 80.4
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 1.2e-83 313.5 211 76.8
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 3.5e-83 312.0 222 73.9
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 4.6e-83 311.6 201 77.1
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 6.0e-83 311.2 235 71.1
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 7.8e-83 310.8 197 81.7
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 7.8e-83 310.8 207 76.8
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 1.3e-82 310.1 212 76.9
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 1.3e-82 310.1 198 77.8
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 1.7e-82 309.7 210 73.8
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 3.0e-82 308.9 204 74.5
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 3.9e-82 308.5 212 76.4
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 1.9e-81 306.2 204 75.0
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 1.9e-81 306.2 197 76.1
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 2.5e-81 305.8 178 82.6
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 7.3e-81 304.3 199 76.9
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 7.3e-81 304.3 314 55.7
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 7.3e-81 304.3 194 75.8
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 4.7e-80 301.6 210 72.4
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 8.0e-80 300.8 175 82.9
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 1.1e-79 300.4 196 74.0
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 1.4e-79 300.1 183 77.0
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 1.4e-79 300.1 166 88.0
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 2.3e-79 299.3 180 80.6
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 4.0e-79 298.5 162 89.5
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 2.0e-78 296.2 213 71.4
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 2.6e-78 295.8 185 78.9
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 3.4e-78 295.4 188 73.9
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 9.8e-78 293.9 155 89.7
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 1.3e-77 293.5 197 74.1
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 1.4e-76 290.0 186 74.2
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 1.9e-76 289.7 204 67.6
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 4.1e-76 288.5 159 85.5
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 7.8e-75 284.3 155 85.8
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 1.3e-74 283.5 179 80.4
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 2.3e-74 282.7 228 65.8
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 4.0e-71 271.9 167 76.0
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 2.9e-69 265.8 192 66.7
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 1.4e-68 263.5 236 60.6
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 1.5e-65 253.4 166 72.9
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 5.6e-65 251.5 145 78.6
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 4.9e-61 238.4 118 93.2
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.4e-60 236.9 157 73.2
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 3.3e-57 225.7 121 83.5
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 7.3e-57 224.6 173 60.1
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 4.0e-55 218.8 158 66.5
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 4.2e-52 208.8 121 76.9
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 1.1e-49 200.7 181 57.5
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 8.1e-48 194.5 181 51.9
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 3.8e-45 185.7 177 57.1
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 5.4e-44 181.8 115 78.3
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 5.4e-44 181.8 115 78.3
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 2.1e-43 179.9 94 88.3
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 4.6e-43 178.7 118 68.6
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 3.4e-30 136.0 93 74.2
HPP92_009894 Vanilla planifolia HOM05D006544 ORTHO05D008757 1.8e-26 123.6 65 87.7
Hund20313 Selenicereus undatus HOM05D006544 ORTHO05D008757 1.3e-24 117.5 72 77.8
CBR_g20266 Chara braunii HOM05D006544 ORTHO05D021234 1.2e-19 100.9 166 34.3
Cpa.g.sc54.74 Carica papaya HOM05D006544 ORTHO05D008757 1.8e-18 97.1 109 56.9
AagrBONN_evm.TU.Sc2ySwM_368.258 Anthoceros agrestis HOM05D006544 ORTHO05D021234 2.5e-17 93.2 126 34.1
Nn2g13777 Nelumbo nucifera HOM05D006544 ORTHO05D008757 7.4e-17 91.7 62 75.8
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 1.8e-15 87.0 71 60.6
SEGI_36386 Sequoiadendron giganteum HOM05D006544 ORTHO05D021234 5.9e-14 82.0 128 32.0
HPP92_009893 Vanilla planifolia HOM05D006544 ORTHO05D008757 1.9e-12 77.0 65 66.2
Cre03.g154600 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D021234 8.8e-10 68.2 170 26.5
Haze_20550 Corylus avellana HOM05D006544 ORTHO05D008757 1.3e-08 64.3 65 61.5
MCO12G278 Micromonas commoda HOM05D006544 ORTHO05D021234 4.8e-08 62.4 106 30.2
MD04G1093800 Malus domestica HOM05D006544 ORTHO05D247365 2.0e-06 57.0 35 74.3


User provided reference genes

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