Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p042719 Quercus lobata HOM05D000063 ORTHO05D337450 3.9e-46 188.0 108 100.0
QL06p045917 Quercus lobata HOM05D000063 ORTHO05D006552 1.8e-35 152.5 108 83.3
Cfa004302 Carpinus fangiana HOM05D000063 ORTHO05D006552 2.0e-26 122.5 109 64.2
Haze_15099 Corylus avellana HOM05D000063 ORTHO05D006552 1.3e-25 119.8 109 63.3
CiPaw.01G037200 Carya illinoinensis HOM05D000063 ORTHO05D006552 6.1e-23 110.9 77 76.6
Manes.01G134900 Manihot esculenta HOM05D000063 ORTHO05D006552 3.9e-22 108.2 108 61.1
RcHm_v2.0_Chr2g0101761 Rosa chinensis HOM05D000063 ORTHO05D006552 1.3e-20 103.2 108 64.8
CiPaw.02G016900 Carya illinoinensis HOM05D000063 ORTHO05D006552 1.7e-20 102.8 77 71.4
GSVIVG01018975001 Vitis vinifera HOM05D000063 ORTHO05D006552 1.1e-19 100.1 68 73.5
Manes.02G093300 Manihot esculenta HOM05D000063 ORTHO05D006552 1.4e-19 99.8 108 55.6
CANSAT01G2661 Cannabis sativa HOM05D000063 ORTHO05D006552 3.1e-19 98.6 105 54.3
Prupe.7G153700 Prunus persica HOM05D000063 ORTHO05D006552 4.1e-19 98.2 95 64.2
FAN23G2312 Fragaria x ananassa HOM05D000063 ORTHO05D006552 9.1e-19 97.1 104 54.8
TWI73G0173 Tripterygium wilfordii HOM05D000063 ORTHO05D006552 9.1e-19 97.1 102 57.8
COL.COLO4_22087 Corchorus olitorius HOM05D000063 ORTHO05D006552 1.2e-18 96.7 109 48.6
FAN28G0791 Fragaria x ananassa HOM05D000063 ORTHO05D006552 1.2e-18 96.7 99 62.6
Duzib187G1709 Durio zibethinus HOM05D000063 ORTHO05D006552 3.4e-18 95.1 108 50.0
Cpa.g.sc6.108 Carica papaya HOM05D000063 ORTHO05D006552 5.9e-18 94.4 112 50.9
FvH4_1g13400 Fragaria vesca HOM05D000063 ORTHO05D006552 1.0e-17 93.6 100 62.0
FAN26G0228 Fragaria x ananassa HOM05D000063 ORTHO05D006552 1.3e-17 93.2 99 61.6
FAN26G2322 Fragaria x ananassa HOM05D000063 ORTHO05D006552 3.8e-17 91.7 78 62.8
MD15G1263000 Malus domestica HOM05D000063 ORTHO05D006552 8.5e-17 90.5 95 54.7
Thecc.01G036700 Theobroma cacao HOM05D000063 ORTHO05D006552 2.5e-16 89.0 108 54.6
TWI09G1068 Tripterygium wilfordii HOM05D000063 ORTHO05D006552 5.5e-16 87.8 98 52.0
MD02G1148800 Malus domestica HOM05D000063 ORTHO05D006552 1.2e-15 86.7 95 48.4
Gohir.D12G064900 Gossypium hirsutum HOM05D000063 ORTHO05D006552 2.1e-15 85.9 95 56.8
Gohir.A12G064800 Gossypium hirsutum HOM05D000063 ORTHO05D006552 4.7e-15 84.7 95 55.8
Gorai.008G068100 Gossypium raimondii HOM05D000063 ORTHO05D006552 1.8e-14 82.8 95 54.7
CsaV3_6G046190 Cucumis sativus L. HOM05D000063 ORTHO05D006552 8.8e-14 80.5 93 50.5
Gohir.A02G164900 Gossypium hirsutum HOM05D000063 ORTHO05D006552 2.0e-13 79.3 56 66.1
Gohir.D03G015100 Gossypium hirsutum HOM05D000063 ORTHO05D006552 2.0e-13 79.3 56 66.1
Gorai.003G015400 Gossypium raimondii HOM05D000063 ORTHO05D006552 2.0e-13 79.3 56 66.1
Duzib147G0595 Durio zibethinus HOM05D000063 ORTHO05D006552 2.6e-13 79.0 111 46.8
Atru.chr3.566 Acer truncatum HOM05D000063 ORTHO05D006552 4.4e-13 78.2 69 63.8
MELO3C007823.2 Cucumis melo HOM05D000063 ORTHO05D006552 5.7e-13 77.8 98 51.0
Hma1.2p1_0400F.1_g144440 Hydrangea macrophylla HOM05D000063 ORTHO05D006552 2.8e-12 75.5 76 53.9
Dinv39979 Davidia involucrata HOM05D000063 ORTHO05D006552 8.2e-12 73.9 93 48.4
ClCG01G019490 Citrullus lanatus HOM05D000063 ORTHO05D006552 1.1e-11 73.6 93 47.3
Duzib264G0653 Durio zibethinus HOM05D000063 ORTHO05D006552 1.1e-11 73.6 95 48.4
Nn1g05012 Nelumbo nucifera HOM05D000063 ORTHO05D006552 1.4e-11 73.2 72 55.6
Nitab4.5_0003835g0020 Nicotiana tabacum HOM05D000063 ORTHO05D006552 3.1e-11 72.0 106 42.5
PGR119G1782 Punica granatum HOM05D000063 ORTHO05D006552 5.3e-11 71.2 94 50.0
TAR628G1337 Trochodendron aralioides HOM05D000063 ORTHO05D006552 7.0e-11 70.9 112 48.2
Actinidia12122 Actinidia chinensis HOM05D000063 ORTHO05D006552 9.1e-11 70.5 62 58.1
Nitab4.5_0000434g0170 Nicotiana tabacum HOM05D000063 ORTHO05D006552 1.2e-10 70.1 106 41.5
Solyc02g085340.1 Solanum lycopersicum HOM05D000063 ORTHO05D006552 1.2e-10 70.1 78 50.0
Sopen02g030030 Solanum pennellii HOM05D000063 ORTHO05D006552 1.2e-10 70.1 78 50.0
Ah.03g140820 Amaranthus hybridus HOM05D000063 ORTHO05D006552 1.6e-10 69.7 76 50.0
Dinv13537 Davidia involucrata HOM05D000063 ORTHO05D006552 2.0e-10 69.3 49 69.4
PGSC0003DMG400014900 Solanum tuberosum HOM05D000063 ORTHO05D006552 2.0e-10 69.3 78 50.0
Nn5g29588 Nelumbo nucifera HOM05D000063 ORTHO05D006552 2.6e-10 68.9 110 46.4
CSS0008701 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D006552 3.5e-10 68.6 75 46.7
CsaV3_4G005070 Cucumis sativus L. HOM05D000063 ORTHO05D006552 4.5e-10 68.2 75 49.3
Sed0007493 Sechium edule HOM05D000063 ORTHO05D006552 4.5e-10 68.2 100 44.0
Actinidia36558 Actinidia chinensis HOM05D000063 ORTHO05D006552 5.9e-10 67.8 109 40.4
DCAR_017272 Daucus carota HOM05D000063 ORTHO05D006552 5.9e-10 67.8 62 59.7
Eucgr.I02451 Eucalyptus grandis HOM05D000063 ORTHO05D006552 1.0e-09 67.0 81 49.4
Lj4P201T24 Lonicera japonica HOM05D000063 ORTHO05D006552 1.3e-09 66.6 105 41.0
MELO3C017561.2 Cucumis melo HOM05D000063 ORTHO05D006552 1.7e-09 66.2 75 48.0
MBI16_g34335_MAGBIO Magnolia biondii HOM05D000063 ORTHO05D006552 2.2e-09 65.9 69 46.4
ClCG07G009170 Citrullus lanatus HOM05D000063 ORTHO05D006552 2.9e-09 65.5 76 48.7
AUR62007560 Chenopodium quinoa HOM05D000063 ORTHO05D006552 6.5e-09 64.3 96 40.6
PSO541G0891 Papaver somniferum HOM05D000063 ORTHO05D006552 8.5e-09 63.9 107 40.2
PSO675G3854 Papaver somniferum HOM05D000063 ORTHO05D006552 8.5e-09 63.9 107 40.2
Cc07_g09460 Coffea canephora HOM05D000063 ORTHO05D006552 1.1e-08 63.5 50 62.0
Aqoxy6G01097 Aquilegia oxysepala HOM05D000063 ORTHO05D006552 1.9e-08 62.8 62 56.5
EL10Ac6g15569 Beta vulgaris HOM05D000063 ORTHO05D006552 1.9e-08 62.8 42 66.7
CAN.G358.98 Capsicum annuum HOM05D000063 ORTHO05D006552 1.9e-08 62.8 99 40.4
Ciclev10025169m.g Citrus clementina HOM05D000063 ORTHO05D006552 1.9e-08 62.8 100 40.0
THA.LOC104821277 Tarenaya hassleriana HOM05D000063 ORTHO05D006552 4.2e-08 61.6 74 50.0
SGA_v2.0_scaffold33G13362 Striga asiatica HOM05D000063 ORTHO05D006552 5.5e-08 61.2 58 53.4
Aa31LG1G15330 Aethionema arabicum HOM05D000063 ORTHO05D006552 1.2e-07 60.1 66 45.5
VMungo1127G0497 Vigna mungo HOM05D000063 ORTHO05D006552 2.1e-07 59.3 73 49.3
AL8G44680 Arabidopsis lyrata HOM05D000063 ORTHO05D006552 3.6e-07 58.5 79 40.5
Peaxi162Scf00515g00055 Petunia axillaris HOM05D000063 ORTHO05D006552 3.6e-07 58.5 51 52.9
Phvul.011G020600 Phaseolus vulgaris HOM05D000063 ORTHO05D006552 3.6e-07 58.5 51 54.9
Sed0018218 Sechium edule HOM05D000063 ORTHO05D006552 4.7e-07 58.2 76 42.1
Sp2g29910 Schrenkiella parvula HOM05D000063 ORTHO05D006552 8.0e-07 57.4 47 57.4
AT5G66770 Arabidopsis thaliana HOM05D000063 ORTHO05D006552 1.4e-06 56.6 79 39.2
Oeu012885.1 Olea europaea HOM05D000063 ORTHO05D006552 1.4e-06 56.6 78 39.7
Oeu050528.1 Olea europaea HOM05D000063 ORTHO05D006552 4.0e-06 55.1 102 36.3
Sp5g11570 Schrenkiella parvula HOM05D000063 ORTHO05D006552 4.0e-06 55.1 49 51.0
arahy.Tifrunner.gnm1.ann1.FGV4G2 Arachis hypogaea HOM05D000063 ORTHO05D006552 5.2e-06 54.7 96 37.5
Thhalv10003860m.g Eutrema salsugineum HOM05D000063 ORTHO05D006552 6.7e-06 54.3 103 38.8
Glyma.12G018100 Glycine max HOM05D000063 ORTHO05D006552 6.7e-06 54.3 48 56.2
Potri.005G123800 Populus trichocarpa HOM05D000063 ORTHO05D006552 6.7e-06 54.3 76 43.4
Sabra07G0023100 Salix brachista HOM05D000063 ORTHO05D006552 6.7e-06 54.3 76 40.8
Lsat_1_v5_gn_3_78100 Lactuca sativa HOM05D000063 ORTHO05D006552 8.8e-06 53.9 72 45.8
Oeu042259.1 Olea europaea HOM05D000063 ORTHO05D006552 8.8e-06 53.9 53 50.9


User provided reference genes

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