Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 2.2e-84 315.8 195 100.0
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 5.9e-61 238.0 201 78.6
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 9.5e-51 204.1 193 67.9
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 5.2e-49 198.4 193 68.4
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 2.0e-48 196.4 193 65.8
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 7.1e-46 188.0 197 68.0
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.3e-44 183.0 196 65.8
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 6.6e-44 181.4 195 59.0
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 8.6e-44 181.0 180 60.0
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 8.6e-44 181.0 194 65.5
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 4.3e-43 178.7 194 64.4
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 9.5e-43 177.6 194 64.4
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 9.5e-43 177.6 176 56.8
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 1.6e-42 176.8 176 63.6
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.1e-42 176.4 194 64.4
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.1e-42 176.4 176 58.5
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 2.8e-42 176.0 170 55.9
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 3.6e-42 175.6 183 54.6
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 1.1e-41 174.1 181 54.7
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 2.4e-41 172.9 181 56.4
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 5.2e-41 171.8 201 57.2
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 1.2e-40 170.6 195 53.8
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.5e-40 170.2 177 59.9
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.4e-40 169.1 175 63.4
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.4e-40 169.1 175 63.4
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 3.4e-40 169.1 181 55.8
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 4.4e-40 168.7 170 57.6
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 9.9e-40 167.5 195 56.4
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 9.9e-40 167.5 180 55.6
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 1.3e-39 167.2 177 55.9
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 2.9e-39 166.0 180 55.0
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 6.4e-39 164.9 177 57.1
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 6.4e-39 164.9 177 57.1
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 6.4e-39 164.9 177 57.1
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.4e-38 163.7 184 52.7
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 2.4e-38 162.9 165 66.7
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 5.4e-38 161.8 177 54.8
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 5.4e-38 161.8 195 52.8
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.6e-37 160.2 176 55.1
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 6.0e-37 158.3 177 53.7
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 6.0e-37 158.3 195 54.9
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 7.8e-37 157.9 185 54.6
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 7.8e-37 157.9 185 54.6
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.3e-36 156.4 176 54.0
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 2.3e-36 156.4 194 50.5
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 2.3e-36 156.4 177 60.5
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 5.1e-36 155.2 195 50.8
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 6.6e-36 154.8 197 54.3
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 2.5e-35 152.9 177 58.2
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 4.3e-35 152.1 178 52.2
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 7.3e-35 151.4 184 50.5
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 2.8e-34 149.4 177 57.1
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 3.6e-34 149.1 179 56.4
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 8.1e-34 147.9 185 50.3
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 8.1e-34 147.9 185 50.3
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.1e-33 147.5 185 56.2
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 1.8e-33 146.7 192 53.6
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 6.9e-33 144.8 214 51.4
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 9.0e-33 144.4 194 48.5
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.5e-32 143.7 166 51.2
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 1.5e-32 143.7 180 50.0
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 4.4e-32 142.1 178 49.4
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 3.8e-31 139.0 167 52.7
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 3.8e-31 139.0 172 50.6
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 6.4e-31 138.3 192 57.3
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.9e-30 136.7 180 45.6
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 2.4e-30 136.3 194 50.0
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 5.4e-30 135.2 178 48.9
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 5.4e-30 135.2 193 47.7
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.0e-28 131.0 197 42.6
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 1.0e-28 131.0 167 51.5
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 1.7e-28 130.2 192 46.9
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 6.6e-28 128.3 162 47.5
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 1.5e-27 127.1 177 51.4
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 1.5e-27 127.1 196 47.4
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 1.5e-27 127.1 162 46.9
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 2.5e-27 126.3 195 44.6
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 7.3e-27 124.8 202 51.0
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 7.3e-27 124.8 195 53.3
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 1.6e-26 123.6 203 46.3
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 1.6e-26 123.6 203 46.3
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 2.1e-26 123.2 257 37.7
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 2.8e-26 122.9 196 53.1
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 8.1e-26 121.3 173 48.6
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 8.1e-26 121.3 203 46.3
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 5.3e-25 118.6 173 49.1
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.5e-24 117.1 170 45.9
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 1.5e-24 117.1 158 47.5
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 2.6e-24 116.3 171 45.0
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 7.6e-24 114.8 99 67.7
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.7e-23 113.6 199 41.7
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 8.4e-23 111.3 266 39.1
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 1.1e-22 110.9 157 50.3
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.1e-22 110.9 157 50.3
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 1.1e-22 110.9 193 50.8
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 1.4e-22 110.5 178 43.8
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 1.4e-22 110.5 160 46.9
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.9e-22 110.2 192 41.7
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.4e-22 109.8 193 42.5
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 2.4e-22 109.8 194 52.1
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 4.2e-22 109.0 181 47.0
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 5.4e-22 108.6 194 50.0
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 1.2e-21 107.5 196 43.4
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 1.6e-21 107.1 201 47.8
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 2.7e-21 106.3 201 51.7
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 3.5e-21 105.9 165 43.0
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 6.0e-21 105.1 203 40.9
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 1.8e-20 103.6 122 54.9
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 5.1e-20 102.1 198 40.9
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 5.1e-20 102.1 193 40.4
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 5.1e-20 102.1 171 46.8
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 3.3e-19 99.4 191 40.8
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 1.3e-18 97.4 96 59.4
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 2.8e-18 96.3 127 48.0
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 4.8e-18 95.5 160 40.6
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 6.2e-18 95.1 198 43.4
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.1e-17 94.4 204 42.2
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 5.8e-16 88.6 190 35.8
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 4.9e-15 85.5 195 44.1
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 3.2e-14 82.8 96 61.5
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 4.2e-14 82.4 154 38.3
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 7.1e-14 81.6 177 43.5
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 7.1e-14 81.6 177 43.5
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-13 80.9 96 55.2
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 1.2e-13 80.9 147 49.7
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 1.6e-13 80.5 124 45.2
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 7.9e-13 78.2 164 48.2
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.1e-12 75.5 71 64.8
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 6.7e-12 75.1 204 38.2
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 3.3e-11 72.8 181 35.9
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 5.6e-11 72.0 83 51.8
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 5.6e-11 72.0 137 39.4
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 5.6e-11 72.0 197 39.1
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 1.3e-10 70.9 96 58.3
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 1.3e-10 70.9 114 51.8
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.1e-10 70.1 68 57.4
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 1.4e-09 67.4 104 47.1
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 2.4e-09 66.6 118 44.9
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 1.7e-07 60.5 195 36.9
FAN07G1641 Fragaria x ananassa HOM05D005061 ORTHO05D006001 4.9e-07 58.9 177 40.1
FAN17G2161 Fragaria x ananassa HOM05D005061 ORTHO05D006001 8.4e-07 58.2 170 40.0
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 3.2e-06 56.2 71 40.8
FAN22G2287 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.5e-06 55.5 174 39.1


User provided reference genes

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