Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 8.7e-97 358.2 429 100.0
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 3.3e-19 100.5 430 47.2
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 4.4e-16 90.1 93 59.1
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 7.5e-16 89.4 93 58.1
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 3.7e-15 87.0 95 54.7
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 1.2e-13 82.0 98 50.0
arahy.Tifrunner.gnm1.ann1.YET5HL Arachis hypogaea HOM05D013121 ORTHO05D015407 2.0e-13 81.3 116 48.3
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 2.0e-13 81.3 96 54.2
arahy.Tifrunner.gnm1.ann1.DLQI02 Arachis hypogaea HOM05D013121 ORTHO05D015407 3.5e-13 80.5 109 50.5
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 1.3e-12 78.6 94 52.1
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.3e-12 78.6 94 52.1
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 1.7e-12 78.2 91 53.8
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 3.0e-12 77.4 92 51.1
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.0e-12 77.4 94 52.1
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.0e-12 77.4 94 52.1
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.0e-12 77.4 94 52.1
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 5.0e-12 76.6 94 54.3
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 6.6e-12 76.3 94 51.1
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 6.6e-12 76.3 92 51.1
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 8.6e-12 75.9 92 48.9
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 8.6e-12 75.9 92 48.9
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 1.1e-11 75.5 93 54.8
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.1e-11 75.5 94 51.1
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 1.5e-11 75.1 93 53.8
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 1.9e-11 74.7 87 56.3
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 4.3e-11 73.6 90 51.1
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 5.6e-11 73.2 93 48.4
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 7.3e-11 72.8 113 42.5
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 9.5e-11 72.4 92 53.3
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 1.2e-10 72.0 92 54.3
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 1.6e-10 71.6 92 48.9
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 1.6e-10 71.6 92 48.9
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 1.6e-10 71.6 92 48.9
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 2.1e-10 71.2 92 52.2
Glyma.10G064400 Glycine max HOM05D013674 ORTHO05D006108 2.1e-10 71.2 86 53.5
GSVIVG01033739001 Vitis vinifera HOM05D006485 ORTHO05D006108 2.1e-10 71.2 85 54.1
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 3.6e-10 70.5 92 47.8
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 6.2e-10 69.7 92 50.0
Ca_08949_v3 Cicer arietinum L. HOM05D013121 ORTHO05D015407 6.2e-10 69.7 123 42.3
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 8.1e-10 69.3 92 47.8
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 1.1e-09 68.9 92 47.8
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.1e-09 68.9 92 51.1
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 1.1e-09 68.9 91 53.8
Gohir.A09G142800 Gossypium hirsutum HOM05D006485 ORTHO05D006108 1.4e-09 68.6 103 48.5
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 1.8e-09 68.2 86 54.7
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 1.8e-09 68.2 86 54.7
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 2.3e-09 67.8 103 48.5
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 3.1e-09 67.4 92 43.5
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 5.2e-09 66.6 90 52.2
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 6.8e-09 66.2 93 46.2
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 6.8e-09 66.2 80 53.8
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 8.9e-09 65.9 101 46.5
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 1.2e-08 65.5 86 53.5
Gorai.006G159500 Gossypium raimondii HOM05D006485 ORTHO05D006108 1.2e-08 65.5 103 47.6
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 1.2e-08 65.5 93 46.2
Lj3C1005T3 Lonicera japonica HOM05D011389 ORTHO05D006108 2.0e-08 64.7 93 50.5
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 2.0e-08 64.7 93 41.9
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 2.6e-08 64.3 90 46.7
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 2.6e-08 64.3 104 43.3
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 3.4e-08 63.9 90 51.1
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 3.4e-08 63.9 90 51.1
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 4.4e-08 63.5 80 53.8
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 4.4e-08 63.5 94 43.6
Cfa016502 Carpinus fangiana HOM05D006485 ORTHO05D006108 5.8e-08 63.2 113 38.9
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 5.8e-08 63.2 79 51.9
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 7.5e-08 62.8 89 43.8
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 7.5e-08 62.8 88 46.6
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 7.5e-08 62.8 88 46.6
Glyma.13G149000 Glycine max HOM05D013674 ORTHO05D006108 9.8e-08 62.4 93 49.5
CSS0004621 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 1.3e-07 62.0 89 42.7
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 1.3e-07 62.0 84 48.8
SHI27750 Sapria himalayana HOM05D006485 ORTHO05D006108 1.7e-07 61.6 85 51.8
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 2.2e-07 61.2 88 53.4
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 2.2e-07 61.2 88 53.4
Peaxi162Scf00078g00310 Petunia axillaris HOM05D011389 ORTHO05D006108 2.9e-07 60.8 94 46.8
CANSAT80G1413 Cannabis sativa HOM05D006485 ORTHO05D006108 3.7e-07 60.5 96 44.8
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 4.9e-07 60.1 88 52.3
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 4.9e-07 60.1 86 40.7
Lalb_Chr06g0172031 Lupinus albus HOM05D013674 ORTHO05D006108 4.9e-07 60.1 93 46.2
unitig_746.g26769 Utricularia gibba HOM05D006485 ORTHO05D006108 4.9e-07 60.1 86 43.0
Nitab4.5_0006314g0010 Nicotiana tabacum HOM05D006485 ORTHO05D006108 6.4e-07 59.7 100 43.0
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 8.3e-07 59.3 51 58.8
Lj5g0014301 Lotus japonicus HOM05D036014 ORTHO05D006108 8.3e-07 59.3 82 50.0
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 8.3e-07 59.3 99 43.4
Peaxi162Scf00078g00039 Petunia axillaris HOM05D011389 ORTHO05D006108 1.1e-06 58.9 94 45.7
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 1.9e-06 58.2 92 41.3
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 2.4e-06 57.8 88 46.6
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 2.4e-06 57.8 49 55.1
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 2.4e-06 57.8 87 44.8
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 3.2e-06 57.4 87 42.5
Medtr1g061730 Medicago truncatula HOM05D013674 ORTHO05D006108 3.2e-06 57.4 48 64.6
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 4.1e-06 57.0 88 46.6
arahy.Tifrunner.gnm1.ann1.I5PMLK Arachis hypogaea HOM05D036014 ORTHO05D006108 4.1e-06 57.0 87 43.7
arahy.Tifrunner.gnm1.ann1.MVX6TJ Arachis hypogaea HOM05D036014 ORTHO05D006108 4.1e-06 57.0 87 43.7
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 4.1e-06 57.0 51 56.9
Actinidia32467 Actinidia chinensis HOM05D011389 ORTHO05D006108 5.4e-06 56.6 91 41.8
Medtr7g103280 Medicago truncatula HOM05D013121 ORTHO05D015407 7.1e-06 56.2 119 38.7
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 7.1e-06 56.2 91 38.5
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 9.2e-06 55.8 83 48.2


User provided reference genes

Program Settings