Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.5e-46 189.1 90 100.0
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.9e-25 119.0 94 64.9
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 8.6e-23 110.2 94 60.6
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 4.3e-22 107.8 82 64.6
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 4.0e-20 101.3 83 63.9
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 6.8e-20 100.5 88 56.8
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 8.9e-20 100.1 82 62.2
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.0e-19 99.0 87 59.8
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 4.4e-19 97.8 91 58.2
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 9.9e-19 96.7 83 57.8
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 4.9e-18 94.4 78 59.0
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 1.1e-17 93.2 82 61.0
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 3.2e-17 91.7 96 53.1
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.4e-17 90.9 93 51.6
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 5.4e-17 90.9 93 50.5
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 5.4e-17 90.9 89 55.1
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.1e-17 90.5 95 51.6
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.2e-17 90.1 95 55.8
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.6e-16 89.4 90 52.2
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.6e-16 89.4 90 52.2
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 2.7e-16 88.6 95 50.5
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.0e-16 87.4 95 50.5
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.0e-16 87.4 88 48.9
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 7.8e-16 87.0 95 49.5
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.0e-15 86.7 90 51.1
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.0e-15 86.7 90 51.1
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.3e-15 86.3 72 59.7
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.3e-15 86.3 80 55.0
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.7e-15 85.9 96 50.0
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.3e-15 85.5 89 53.9
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.3e-15 85.5 94 48.9
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 2.3e-15 85.5 82 57.3
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 2.3e-15 85.5 89 52.8
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 3.0e-15 85.1 90 52.2
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 5.1e-15 84.3 84 54.8
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 6.6e-15 84.0 78 52.6
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.5e-14 82.8 87 49.4
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.5e-14 82.8 88 50.0
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 1.9e-14 82.4 86 48.8
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.9e-14 82.4 88 50.0
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.9e-14 82.4 88 50.0
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.5e-14 82.0 81 50.6
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.3e-14 81.6 94 46.8
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 3.3e-14 81.6 90 50.0
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 4.3e-14 81.3 87 51.7
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.3e-14 81.3 89 46.1
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 4.3e-14 81.3 89 50.6
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.3e-14 81.3 94 50.0
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.6e-14 80.9 91 51.6
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.6e-14 80.9 96 49.0
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.6e-14 80.9 96 49.0
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 7.3e-14 80.5 89 43.8
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 7.3e-14 80.5 81 54.3
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 9.6e-14 80.1 84 52.4
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.6e-14 80.1 69 55.1
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.2e-13 79.7 80 53.8
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.2e-13 79.7 93 47.3
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.2e-13 79.7 85 52.9
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.6e-13 79.3 62 61.3
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.1e-13 79.0 90 47.8
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.1e-13 79.0 93 45.2
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 2.1e-13 79.0 84 50.0
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 2.1e-13 79.0 98 46.9
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 2.1e-13 79.0 98 48.0
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.1e-13 79.0 94 47.9
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.8e-13 78.6 85 52.9
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.8e-13 78.6 83 50.6
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.6e-13 78.2 90 47.8
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.6e-13 78.2 86 50.0
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.6e-13 78.2 82 48.8
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.7e-13 77.8 81 49.4
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.7e-13 77.8 91 44.0
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.2e-13 77.4 87 50.6
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 6.2e-13 77.4 87 49.4
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 6.2e-13 77.4 64 57.8
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 8.1e-13 77.0 84 48.8
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 8.1e-13 77.0 93 47.3
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.1e-12 76.6 81 46.9
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 1.1e-12 76.6 84 52.4
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.1e-12 76.6 85 49.4
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.8e-12 75.9 94 45.7
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.8e-12 75.9 85 50.6
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.8e-12 75.9 80 50.0
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.8e-12 75.9 87 49.4
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 1.8e-12 75.9 88 47.7
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.8e-12 75.9 81 48.1
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 2.4e-12 75.5 91 46.2
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.4e-12 75.5 81 49.4
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.1e-12 75.1 86 45.3
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 3.1e-12 75.1 88 51.1
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 3.1e-12 75.1 88 51.1
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.0e-12 74.7 85 48.2
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 5.3e-12 74.3 83 49.4
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 5.3e-12 74.3 84 51.2
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 6.9e-12 73.9 84 48.8
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 6.9e-12 73.9 82 48.8
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 6.9e-12 73.9 80 51.2
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 6.9e-12 73.9 80 55.0
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.9e-12 73.9 83 47.0
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 9.0e-12 73.6 84 52.4
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 9.0e-12 73.6 91 44.0
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-11 73.2 81 46.9
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 1.2e-11 73.2 54 61.1
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 1.2e-11 73.2 89 44.9
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.5e-11 72.8 89 42.7
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.5e-11 72.8 89 42.7
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.5e-11 72.8 81 48.1
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.5e-11 72.8 71 52.1
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.0e-11 72.4 82 52.4
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 2.0e-11 72.4 90 42.2
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 2.6e-11 72.0 64 56.2
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 2.6e-11 72.0 86 45.3
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.6e-11 72.0 87 43.7
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.6e-11 72.0 90 46.7
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 2.6e-11 72.0 91 45.1
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 3.4e-11 71.6 91 45.1
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 3.4e-11 71.6 89 48.3
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.4e-11 71.6 95 47.4
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.4e-11 71.6 81 48.1
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 4.4e-11 71.2 88 44.3
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 4.4e-11 71.2 95 43.2
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.4e-11 71.2 81 46.9
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 5.8e-11 70.9 86 46.5
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 5.8e-11 70.9 87 46.0
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.8e-11 70.9 89 40.4
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 7.6e-11 70.5 95 43.2
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 7.6e-11 70.5 81 45.7
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 7.6e-11 70.5 76 52.6
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 9.9e-11 70.1 82 43.9
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 9.9e-11 70.1 82 43.9
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.9e-11 70.1 86 50.0
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 9.9e-11 70.1 63 54.0
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.3e-10 69.7 95 44.2
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.3e-10 69.7 93 45.2
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.3e-10 69.7 87 47.1
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.3e-10 69.7 71 54.9
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.3e-10 69.7 91 44.0
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.3e-10 69.7 90 44.4
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.2e-10 68.9 84 48.8
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.9e-10 68.6 91 46.2
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.8e-10 68.2 55 54.5
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 6.4e-10 67.4 81 43.2
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 8.4e-10 67.0 80 48.8
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.1e-09 66.6 100 39.0
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.4e-09 66.2 83 41.0
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.9e-09 65.9 89 40.4
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.9e-09 65.9 89 40.4
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.4e-09 65.5 37 70.3
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.4e-09 65.5 35 80.0
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 2.4e-09 65.5 83 44.6
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 2.4e-09 65.5 87 48.3
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.2e-09 65.1 83 43.4
Ah.08g210930 Amaranthus hybridus HOM05D040036 ORTHO05D004215 5.4e-09 64.3 95 44.2
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 5.4e-09 64.3 93 43.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 5.4e-09 64.3 93 43.0
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 5.4e-09 64.3 83 42.2
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 5.4e-09 64.3 42 64.3
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 5.4e-09 64.3 83 39.8
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 5.4e-09 64.3 84 40.5
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 7.1e-09 63.9 87 48.3
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 9.3e-09 63.5 88 43.2
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 9.3e-09 63.5 44 63.6
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 1.6e-08 62.8 41 68.3
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.7e-08 62.0 95 42.1
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 3.5e-08 61.6 96 40.6
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.5e-08 61.6 65 55.4
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 4.6e-08 61.2 89 41.6
EL10Ac7g16989 Beta vulgaris HOM05D040036 ORTHO05D004215 7.8e-08 60.5 89 46.1
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 7.8e-08 60.5 82 41.5
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 7.8e-08 60.5 40 65.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.0e-07 60.1 41 63.4
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.0e-07 60.1 96 41.7
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 1.3e-07 59.7 86 36.0
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.7e-07 59.3 95 42.1
ClCG10G019330 Citrullus lanatus HOM05D033636 ORTHO05D034744 3.0e-07 58.5 77 44.2
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 3.9e-07 58.2 34 73.5
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 3.9e-07 58.2 42 64.3
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 8.7e-07 57.0 41 61.0
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 1.1e-06 56.6 80 43.8
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 1.5e-06 56.2 84 42.9
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.5e-06 56.2 35 65.7
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 1.9e-06 55.8 96 39.6
AUR62033576 Chenopodium quinoa HOM05D040036 ORTHO05D004215 1.9e-06 55.8 89 38.2
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.5e-06 55.5 44 50.0
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 4.3e-06 54.7 89 39.3


User provided reference genes

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