Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 1.9e-298 1028.5 539 100.0
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 9.3e-173 610.9 538 66.9
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 1.4e-163 580.5 506 66.4
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 1.1e-157 560.8 536 63.2
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 8.0e-148 528.1 565 58.9
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 2.3e-147 526.6 512 60.9
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 1.9e-133 480.3 507 57.4
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 6.8e-131 471.9 507 55.0
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 2.8e-129 466.5 511 56.9
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 8.3e-129 464.9 514 55.8
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.4e-128 464.2 528 55.1
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 7.0e-128 461.8 509 56.2
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 5.0e-126 455.7 515 55.5
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 8.6e-126 454.9 508 55.3
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 5.5e-125 452.2 559 52.1
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 1.6e-124 450.7 506 54.5
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 2.1e-116 423.7 508 52.2
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 8.0e-116 421.8 483 52.6
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.1e-115 419.9 514 53.1
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 5.8e-114 415.6 503 51.1
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 1.7e-113 414.1 533 48.8
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 2.0e-111 407.1 524 49.4
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 1.3e-110 404.4 536 48.9
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 1.7e-110 404.1 525 50.3
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 9.2e-104 381.7 509 49.5
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 4.3e-101 372.9 508 49.4
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 1.4e-91 341.3 423 50.6
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 7.8e-87 325.5 629 39.9
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 1.5e-85 321.2 512 44.9
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 1.9e-85 320.9 585 42.1
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 3.4e-82 310.1 521 44.9
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 1.1e-80 305.1 522 45.0
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 2.4e-80 303.9 517 44.5
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 4.6e-79 299.7 602 39.9
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 5.1e-78 296.2 532 44.7
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 1.9e-77 294.3 605 39.8
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 1.3e-76 291.6 518 43.1
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 2.8e-76 290.4 575 39.8
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 8.1e-76 288.9 521 41.8
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 1.1e-75 288.5 501 42.3
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 6.9e-75 285.8 375 50.9
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 4.5e-74 283.1 548 39.2
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 9.9e-74 282.0 504 41.3
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 1.1e-72 278.5 505 41.6
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 1.9e-72 277.7 501 41.9
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 1.6e-71 274.6 497 41.2
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 1.6e-71 274.6 531 39.7
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 2.3e-70 270.8 509 40.5
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 3.9e-70 270.0 524 41.6
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 5.6e-69 266.2 404 47.3
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 2.1e-68 264.2 530 39.2
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 9.0e-67 258.8 527 39.8
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 1.2e-66 258.5 509 40.9
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 1.2e-66 258.5 527 39.8
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 1.2e-66 258.5 527 40.4
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 9.3e-64 248.8 368 46.2
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 2.1e-63 247.7 514 39.3
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 6.0e-63 246.1 513 39.0
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 6.0e-63 246.1 515 41.4
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 7.9e-63 245.7 540 39.3
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 1.1e-61 241.9 560 37.1
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 4.3e-61 240.0 505 40.0
QL07p039646 Quercus lobata HOM05D005512 ORTHO05D006716 5.7e-61 239.6 333 48.3
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 2.1e-60 237.7 466 38.8
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 2.6e-58 230.7 314 52.2
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 1.0e-57 228.8 498 38.8
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 1.7e-57 228.0 359 43.5
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 2.2e-57 227.6 523 37.9
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 5.0e-57 226.5 519 36.2
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 1.4e-56 224.9 501 40.5
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 1.6e-55 221.5 532 38.9
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 2.3e-54 217.6 426 39.7
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 2.3e-54 217.6 519 37.2
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 1.7e-49 201.4 495 38.0
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 2.9e-49 200.7 404 37.9
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 6.5e-49 199.5 317 40.4
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 6.1e-47 193.0 393 36.9
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 2.5e-45 187.6 504 33.9
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 1.8e-43 181.4 382 34.3
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 9.1e-43 179.1 514 34.2
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 1.4e-40 171.8 432 34.0
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 3.6e-39 167.2 345 39.7
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 7.9e-39 166.0 392 37.2
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 8.8e-38 162.5 398 37.4
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 5.7e-37 159.8 437 34.1
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 7.4e-37 159.5 394 37.1
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 9.7e-37 159.1 379 35.6
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 9.7e-37 159.1 379 35.6
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 1.4e-35 155.2 410 34.6
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 1.4e-35 155.2 495 32.7
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 4.1e-35 153.7 508 35.0
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 5.3e-35 153.3 461 34.1
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 5.0e-33 146.7 217 47.0
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 1.9e-32 144.8 411 33.3
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.1e-29 135.6 395 33.4
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 1.0e-25 122.5 362 31.8
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 1.0e-25 122.5 378 33.6
Ca_08983_v3 Cicer arietinum L. HOM05D005512 ORTHO05D006716 1.0e-25 122.5 408 33.3
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 1.0e-25 122.5 276 37.7
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 2.7e-23 114.4 145 49.7
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 2.6e-21 107.8 145 48.3
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 3.4e-21 107.5 459 30.9
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 2.2e-20 104.8 346 30.9
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 2.2e-20 104.8 342 33.0
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 8.3e-20 102.8 183 45.9
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 1.1e-19 102.4 358 30.4
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 1.8e-19 101.7 335 32.8
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 7.0e-19 99.8 175 40.6
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 9.1e-19 99.4 279 35.1
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 1.6e-18 98.6 281 37.7
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 2.0e-18 98.2 374 29.1
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 2.7e-18 97.8 175 40.6
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 5.5e-16 90.1 147 42.9
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 4.7e-15 87.0 81 61.7
Actinidia02438 Actinidia chinensis HOM05D005512 ORTHO05D006716 6.8e-14 83.2 215 33.5
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 1.2e-13 82.4 90 54.4
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 1.5e-13 82.0 284 32.0
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 2.6e-13 81.3 250 30.8
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 9.8e-13 79.3 355 30.1
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 1.8e-11 75.1 78 59.0
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 4.1e-11 73.9 123 45.5
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 9.1e-11 72.8 256 32.0
ATR0820G116 Amborella trichopoda HOM05D005512 ORTHO05D006716 3.8e-09 67.4 176 38.6
BcaC05g25849 Brassica carinata HOM05D005512 ORTHO05D006716 6.6e-09 66.6 169 39.6
Atru.chr8.1591 Acer truncatum HOM05D005512 ORTHO05D006716 1.1e-08 65.9 49 69.4
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 9.5e-08 62.8 154 39.0
Ah.08g210690 Amaranthus hybridus HOM05D005512 ORTHO05D006716 6.1e-07 60.1 324 27.5
Sc07g0005480 Simmondsia chinensis HOM05D005512 ORTHO05D006716 8.0e-07 59.7 178 36.0
Mapoly0016s0098 Marchantia polymorpha HOM05D005512 ORTHO05D006716 1.4e-06 58.9 121 39.7


User provided reference genes

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