Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 0.0e+00 1761.5 907 100.0
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 0.0e+00 1265.4 923 71.8
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 0.0e+00 1233.8 924 74.0
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 8.3e-299 1030.4 901 59.0
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.2e-284 983.4 879 58.6
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 1.1e-279 966.8 1016 53.5
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 5.2e-277 958.0 879 59.4
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 9.9e-276 953.7 870 59.7
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 2.3e-272 942.6 899 58.6
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 3.9e-272 941.8 873 58.5
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 2.5e-271 939.1 1010 53.1
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 7.3e-263 911.0 939 52.5
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 6.2e-262 907.9 898 54.7
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 2.4e-261 906.0 896 54.5
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.4e-261 906.0 1001 52.4
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.6e-257 893.3 898 54.2
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 2.0e-252 876.3 865 54.6
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 9.9e-252 874.0 988 51.6
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 2.2e-251 872.8 871 53.0
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.1e-249 866.3 748 64.7
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 7.9e-249 864.4 995 49.4
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 3.9e-248 862.1 1104 47.6
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 3.1e-245 852.4 889 52.5
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 5.3e-245 851.7 744 59.7
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 6.9e-245 851.3 881 53.1
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.3e-243 847.0 961 51.9
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 2.2e-243 846.3 1135 46.7
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 7.4e-239 831.2 885 52.8
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 9.7e-239 830.9 913 51.4
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 3.7e-238 828.9 864 53.0
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 2.5e-231 806.2 942 47.0
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 2.4e-229 799.7 1094 45.4
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 1.5e-228 797.0 854 52.7
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 2.6e-228 796.2 988 46.2
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 3.4e-228 795.8 946 49.2
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 2.1e-225 786.6 1027 45.7
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 4.7e-225 785.4 905 49.6
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 1.4e-224 783.9 872 50.7
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 3.9e-224 782.3 879 51.3
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 3.9e-224 782.3 878 51.0
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 4.8e-222 775.4 874 51.9
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 6.3e-222 775.0 874 50.7
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 6.3e-222 775.0 880 50.8
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.8e-221 773.5 869 49.6
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.8e-221 773.5 869 49.6
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 2.0e-220 770.0 865 50.3
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 4.5e-220 768.8 863 50.5
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 1.0e-219 767.7 868 50.9
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 2.2e-219 766.5 869 49.4
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 2.9e-219 766.1 863 50.4
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 8.5e-219 764.6 968 45.6
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 8.5e-219 764.6 968 45.6
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.1e-218 764.2 904 47.0
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.9e-218 763.5 973 45.6
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 4.7e-217 758.8 941 46.7
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.4e-216 757.3 957 46.7
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 1.8e-216 756.9 1057 44.1
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 2.3e-216 756.5 1071 42.2
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 3.0e-216 756.1 940 46.0
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 1.1e-215 754.2 972 45.7
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 2.0e-215 753.4 853 49.4
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 7.4e-215 751.5 915 48.0
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 2.2e-214 750.0 850 49.3
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 8.2e-214 748.0 711 58.5
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.4e-213 747.3 889 49.5
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.8e-213 746.9 1031 43.8
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 2.4e-213 746.5 1056 43.4
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 5.9e-212 741.9 1078 44.0
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 6.5e-211 738.4 1052 43.3
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 5.5e-210 735.3 1018 44.0
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 9.4e-210 734.6 1033 43.3
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 1.6e-209 733.8 876 48.3
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 2.1e-209 733.4 1075 42.5
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.4e-208 730.7 871 47.2
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 6.7e-208 728.4 1092 40.0
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 4.1e-205 719.2 985 42.1
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.1e-202 711.1 1174 39.9
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 2.7e-201 706.4 1153 39.2
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.8e-200 703.7 941 44.6
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 7.5e-199 698.4 864 47.6
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.3e-198 697.6 844 46.2
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 4.8e-198 695.7 918 45.9
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 9.1e-197 691.4 925 46.1
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.6e-196 690.6 922 46.4
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 7.7e-196 688.3 735 52.1
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.1e-193 680.2 923 47.0
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 7.5e-191 671.8 1022 40.5
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 1.2e-188 664.5 868 47.8
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.1e-186 657.9 856 44.6
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 3.3e-186 656.4 640 55.3
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.1e-184 649.8 853 45.3
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.5e-183 647.5 1062 41.5
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 2.5e-178 630.2 930 43.8
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 2.9e-174 616.7 656 54.6
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 3.2e-173 613.2 869 43.3
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.1e-172 610.5 657 52.7
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 6.6e-171 605.5 1004 40.6
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 3.3e-170 603.2 1077 38.0
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 5.4e-165 585.9 863 41.4
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.2e-159 568.2 866 44.5
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 6.2e-153 545.8 1188 33.2
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 4.2e-149 533.1 636 48.7
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 3.5e-148 530.0 937 39.3
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 4.8e-145 519.6 673 46.2
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 1.9e-141 507.7 855 39.6
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 7.1e-141 505.8 857 36.8
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.6e-140 504.6 711 42.1
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 8.4e-126 455.7 374 61.0
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 8.7e-123 445.7 501 45.9
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.0e-115 422.2 325 61.8
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 4.1e-112 410.2 562 41.1
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 7.0e-104 382.9 805 31.7
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 4.5e-103 380.2 826 33.1
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 1.1e-101 375.6 846 31.6
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 2.1e-92 344.7 304 62.8
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.8e-91 341.7 292 57.9
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 2.8e-81 307.8 559 39.7
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 1.6e-71 275.4 389 46.5
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.9e-69 268.5 218 61.0
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.0e-68 263.1 369 49.6
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.0e-68 263.1 276 50.7
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 1.8e-67 261.9 281 52.3
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 4.9e-65 253.8 297 47.1
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.9e-64 251.9 480 38.1
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 9.8e-58 229.6 327 45.3
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.5e-55 221.1 207 54.1
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.1e-52 209.9 257 49.4
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 1.8e-51 208.8 641 29.3
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.5e-50 205.7 131 72.5
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 2.0e-50 205.3 288 47.9
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 8.4e-49 199.9 213 52.1
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 8.6e-46 189.9 361 33.5
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 4.7e-44 184.1 346 37.9
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 4.4e-42 177.6 297 38.4
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 6.0e-39 167.2 208 41.3
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 1.8e-35 155.6 211 44.5
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 2.4e-35 155.2 477 31.4
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 5.4e-32 144.1 205 46.3
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 7.1e-32 143.7 218 42.2
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.6e-31 142.5 119 61.3
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 9.6e-29 133.3 537 26.1
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.4e-27 128.6 101 61.4
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 2.9e-25 121.7 206 38.3
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 9.3e-24 116.7 186 37.1
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 9.3e-16 90.1 200 30.0
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 4.3e-13 81.3 92 45.7
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 2.8e-12 78.6 115 43.5
QL02p059287 Quercus lobata HOM05D006674 ORTHO05D007954 1.7e-09 69.3 47 76.6
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 3.8e-09 68.2 111 41.4
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 4.2e-08 64.7 40 72.5
MD03G1008700 Malus domestica HOM05D004666 ORTHO05D005822 1.0e-06 60.1 33 66.7
TAR206G0003 Trochodendron aralioides HOM05D004666 ORTHO05D416157 5.1e-06 57.8 52 48.1


User provided reference genes

Program Settings