Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 6.3e-146 520.8 269 100.0
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 3.4e-115 418.7 268 80.2
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 8.6e-111 404.1 270 79.6
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 2.5e-102 375.9 266 70.3
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 9.6e-102 374.0 267 70.8
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 1.6e-101 373.2 268 69.0
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.6e-101 373.2 268 69.0
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 3.6e-101 372.1 267 72.3
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 2.4e-100 369.4 263 71.5
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 6.9e-100 367.9 271 69.4
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 5.8e-99 364.8 273 67.4
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 7.6e-99 364.4 268 67.2
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 9.9e-99 364.0 261 70.1
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 2.9e-98 362.5 270 68.5
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 8.4e-98 360.9 262 67.6
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 1.4e-97 360.1 270 69.6
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 2.4e-97 359.4 262 67.9
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 3.2e-97 359.0 270 68.9
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 7.1e-97 357.8 270 67.8
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 7.1e-97 357.8 263 68.1
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 9.3e-97 357.5 263 67.7
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 2.1e-96 356.3 291 63.6
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 2.7e-96 355.9 266 66.2
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 3.5e-96 355.5 270 67.8
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 3.0e-95 352.4 268 67.9
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 6.7e-95 351.3 268 62.3
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 8.7e-95 350.9 268 66.4
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 1.1e-94 350.5 263 65.8
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.1e-94 350.5 267 65.5
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 2.5e-94 349.4 266 66.9
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 2.5e-94 349.4 266 66.9
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 2.5e-94 349.4 266 63.2
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 7.4e-94 347.8 263 66.2
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 1.3e-93 347.1 268 61.9
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 2.1e-93 346.3 263 67.7
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 2.8e-93 345.9 263 66.9
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 4.8e-93 345.1 263 66.9
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 6.2e-93 344.7 268 64.6
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 8.1e-93 344.4 266 63.2
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 1.4e-92 343.6 263 67.3
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.8e-92 343.2 266 65.4
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.8e-92 343.2 271 64.6
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 4.0e-92 342.0 271 65.7
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 2.0e-91 339.7 268 64.9
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 4.5e-91 338.6 267 62.9
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 7.6e-91 337.8 263 66.5
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 2.9e-90 335.9 263 65.4
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 1.9e-89 333.2 263 65.0
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 7.1e-89 331.3 255 63.9
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 2.1e-88 329.7 268 59.7
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 6.0e-88 328.2 263 62.4
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 3.0e-87 325.9 267 63.3
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 3.9e-87 325.5 268 62.3
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 1.9e-86 323.2 263 63.1
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 2.5e-86 322.8 268 62.7
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 4.3e-86 322.0 268 61.6
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 4.3e-86 322.0 256 62.1
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 9.6e-86 320.9 268 61.2
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 1.6e-85 320.1 268 63.4
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 2.8e-85 319.3 268 60.4
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 6.2e-85 318.2 268 61.6
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 1.4e-84 317.0 269 61.7
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 1.4e-84 317.0 249 62.2
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 1.4e-84 317.0 265 62.3
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.4e-84 316.2 269 61.7
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 4.0e-84 315.5 268 60.4
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 5.3e-84 315.1 251 63.7
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 3.4e-83 312.4 261 62.8
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 3.4e-83 312.4 261 62.8
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 3.4e-83 312.4 266 60.5
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 3.4e-83 312.4 269 59.5
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 4.5e-83 312.0 265 60.8
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 7.6e-83 311.2 262 63.0
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 1.3e-82 310.5 261 62.8
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 1.7e-82 310.1 264 61.7
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 6.5e-82 308.1 261 60.5
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 8.4e-82 307.8 244 66.4
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 1.4e-81 307.0 261 62.1
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 9.3e-81 304.3 267 61.0
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 2.1e-80 303.1 268 59.0
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 1.3e-79 300.4 267 57.7
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 2.3e-79 299.7 245 64.9
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 3.0e-79 299.3 277 58.1
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 2.1e-77 293.1 241 59.8
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 3.7e-77 292.4 264 59.1
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.1e-76 290.8 260 61.5
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.4e-76 290.4 241 61.8
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 1.2e-75 287.3 267 55.4
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 5.9e-75 285.0 265 57.0
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 2.2e-74 283.1 264 57.2
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 3.0e-71 272.7 187 71.1
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 6.3e-69 265.0 263 53.6
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 3.7e-61 239.2 180 65.0
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 4.8e-61 238.8 180 64.4
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 2.4e-60 236.5 213 55.4
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 1.2e-59 234.2 186 60.8
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 1.7e-58 230.3 302 45.7
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 3.6e-56 222.6 260 45.8
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 5.7e-54 215.3 263 44.5
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 1.7e-53 213.8 196 58.2
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 2.8e-53 213.0 165 61.8
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 3.7e-53 212.6 224 48.7
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 1.2e-48 197.6 273 41.4
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 4.8e-45 185.7 252 42.5
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 1.8e-44 183.7 262 44.3
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 2.7e-40 169.9 109 72.5
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 2.7e-40 169.9 175 53.7
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 6.1e-40 168.7 162 53.7
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 2.3e-39 166.8 256 41.8
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 3.4e-38 162.9 155 56.8
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 1.1e-36 157.9 154 52.6
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 2.5e-33 146.7 105 64.8
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 1.2e-32 144.4 282 33.7
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 8.8e-31 138.3 169 47.9
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 5.7e-30 135.6 111 57.7
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.3e-29 134.4 166 47.6
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 6.3e-29 132.1 179 47.5
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 7.8e-27 125.2 110 58.2
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.4e-23 114.4 193 41.5
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 4.0e-23 112.8 107 51.4
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 1.6e-16 90.9 109 43.1
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 4.7e-16 89.4 58 72.4
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 2.2e-13 80.5 57 66.7
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 3.2e-12 76.6 109 40.4
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 5.4e-12 75.9 49 65.3
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.6e-11 74.3 49 63.3
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 1.3e-10 71.2 37 86.5
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 5.8e-06 55.8 56 51.8


User provided reference genes

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