Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 2.4e-295 1018.1 520 100.0
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.3e-293 1012.3 520 99.6
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 7.0e-234 813.9 527 80.1
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 5.2e-229 797.7 523 79.2
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.0e-228 795.8 591 71.9
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 4.4e-228 794.7 528 79.7
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 4.9e-227 791.2 528 77.1
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 3.2e-226 788.5 528 77.8
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 4.5e-225 784.6 526 78.1
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.9e-223 779.2 531 77.8
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 5.6e-223 777.7 522 78.2
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 4.7e-222 774.6 522 75.7
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.2e-220 770.0 529 74.9
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.5e-220 769.6 521 76.6
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 3.4e-220 768.5 521 76.4
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 5.8e-220 767.7 538 74.0
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 5.8e-220 767.7 523 76.5
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 7.5e-220 767.3 531 74.8
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 2.9e-219 765.4 526 74.9
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.7e-219 765.0 521 75.2
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 4.9e-219 764.6 520 75.2
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.3e-219 763.8 519 75.7
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.9e-218 762.7 547 72.4
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-218 762.7 519 75.5
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 7.0e-218 760.8 537 73.0
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.0e-217 759.2 547 72.2
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 2.0e-217 759.2 525 76.8
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.5e-217 758.4 532 74.1
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 6.0e-217 757.7 527 75.7
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 6.0e-217 757.7 523 74.0
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 6.0e-217 757.7 523 74.0
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 3.0e-216 755.4 523 74.6
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 5.0e-216 754.6 532 72.9
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.1e-215 753.4 433 86.4
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 2.1e-214 749.2 525 73.0
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.8e-214 748.8 522 75.1
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 2.8e-214 748.8 526 75.9
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 3.6e-214 748.4 525 74.9
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 4.9e-211 738.0 530 72.3
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.1e-210 736.9 520 72.3
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.1e-210 736.9 528 72.0
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.4e-210 736.5 478 79.1
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 9.2e-210 733.8 527 71.3
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 6.0e-209 731.1 482 76.6
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.3e-208 729.9 522 73.4
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.9e-208 728.4 522 72.8
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.9e-207 726.1 488 76.2
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 3.6e-206 721.8 527 71.9
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.1e-205 720.3 530 70.9
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 2.3e-205 719.2 524 71.4
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 6.8e-205 717.6 524 71.4
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 5.8e-204 714.5 528 70.8
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 3.7e-203 711.8 533 70.4
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 8.3e-203 710.7 523 70.7
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 4.1e-202 708.4 433 80.1
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.1e-199 700.3 404 85.4
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 3.6e-198 695.3 530 67.9
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 1.4e-197 693.3 529 66.7
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.4e-197 693.3 452 75.2
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 3.1e-197 692.2 433 79.4
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 5.2e-197 691.4 528 67.8
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.5e-196 689.9 526 68.1
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.5e-196 689.9 524 71.6
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.8e-195 685.3 450 74.0
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 8.4e-195 684.1 496 69.4
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.9e-194 682.9 534 66.3
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.2e-193 680.2 526 67.7
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.6e-193 679.9 529 67.3
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 6.6e-192 674.5 525 68.0
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.6e-190 669.8 522 68.6
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 8.1e-190 667.5 531 65.9
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.4e-189 666.8 525 66.7
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.5e-188 663.3 807 50.2
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 4.4e-188 661.8 434 78.8
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 7.6e-188 661.0 532 64.3
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 2.9e-187 659.1 526 65.2
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 3.2e-186 655.6 528 65.0
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 7.1e-186 654.4 525 64.6
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 1.6e-185 653.3 541 61.9
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 2.1e-185 652.9 527 63.6
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 2.7e-185 652.5 527 63.6
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 2.7e-185 652.5 527 63.6
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 3.5e-185 652.1 391 81.8
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 4.6e-185 651.7 526 64.3
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 7.9e-185 651.0 542 61.6
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.0e-184 650.6 528 64.6
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 2.5e-183 646.0 535 65.6
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.3e-182 643.7 402 78.4
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 2.8e-182 642.5 526 63.5
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 8.1e-182 641.0 543 61.5
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-180 637.1 391 80.1
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 9.3e-178 627.5 496 66.5
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.7e-177 625.9 411 74.0
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 8.4e-171 604.4 495 63.2
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 9.3e-170 600.9 540 60.6
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 9.6e-167 590.9 579 56.1
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 6.2e-166 588.2 464 65.7
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.1e-165 587.4 508 61.2
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.4e-165 587.0 483 65.4
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.9e-162 576.6 476 63.2
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 3.2e-162 575.9 427 71.4
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 5.5e-162 575.1 469 64.2
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 9.3e-162 574.3 410 72.2
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 3.1e-157 559.3 412 71.6
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 2.5e-154 549.7 553 56.2
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.8e-149 533.5 460 62.6
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 7.0e-141 505.0 487 55.6
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 1.2e-140 504.2 453 58.9
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 2.6e-135 486.5 541 54.2
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 2.6e-132 476.5 451 54.8
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 7.7e-124 448.4 453 57.6
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 6.1e-121 438.7 411 57.4
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.2e-119 434.5 486 47.9
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.8e-118 429.9 453 51.0
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 5.0e-115 419.1 483 50.7
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 1.1e-101 374.8 279 70.6
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.1e-98 364.8 404 53.2
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 2.3e-91 340.5 300 59.0
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 3.9e-91 339.7 215 74.9
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 5.1e-91 339.3 444 41.7
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 4.3e-90 336.3 440 44.1
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.6e-84 317.8 379 50.1
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 8.9e-80 302.0 506 37.5
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 4.4e-71 273.1 230 66.1
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.2e-60 238.4 187 65.8
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.6e-57 228.0 158 69.6
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.7e-52 210.7 267 48.7
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.5e-50 204.9 164 64.6
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.8e-48 198.0 246 48.4
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 4.1e-48 196.8 264 46.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.0e-43 182.2 494 33.8
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 6.3e-41 172.9 174 58.6
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 2.4e-40 171.0 171 60.8
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.1e-40 170.2 375 36.0
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 2.0e-39 167.9 244 45.9
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 2.6e-39 167.5 115 71.3
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-38 165.2 166 59.0
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-37 162.2 107 78.5
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 2.5e-37 161.0 237 46.4
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 3.2e-37 160.6 113 76.1
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.2e-37 160.6 259 42.5
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 3.6e-36 157.1 129 64.3
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 7.9e-36 156.0 96 81.2
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 3.9e-35 153.7 100 72.0
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 6.5e-30 136.3 111 64.9
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.4e-29 135.2 135 54.1
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.7e-28 130.2 95 66.3
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 6.1e-28 129.8 134 60.4
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 2.6e-26 124.4 82 75.6
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.3e-22 112.1 222 38.7
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.3e-22 112.1 222 38.7
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 6.5e-22 109.8 77 75.3
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 6.1e-20 103.2 232 33.6
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 6.7e-19 99.8 134 50.0
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 6.3e-17 93.2 119 50.4
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 2.4e-16 91.3 94 47.9
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.0e-15 88.2 62 71.0
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.7e-15 87.8 103 52.4
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 1.3e-14 85.5 153 32.0
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.2e-13 80.9 92 46.7
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 8.3e-09 66.2 38 78.9
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 8.3e-09 66.2 38 78.9
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 8.3e-09 66.2 38 78.9
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 8.3e-09 66.2 38 78.9
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 5.4e-08 63.5 45 68.9
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 5.4e-08 63.5 45 68.9
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 5.4e-08 63.5 45 68.9
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 2.7e-07 61.2 72 55.6


User provided reference genes

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