Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.9e-295 1018.5 520 100.0
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.3e-293 1012.3 520 99.6
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 4.1e-234 814.7 527 80.1
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.2e-228 796.6 591 71.9
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 2.0e-228 795.8 523 79.0
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 2.6e-228 795.4 528 79.7
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 4.1e-226 788.1 528 76.9
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.6e-225 786.2 528 77.7
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 2.3e-224 782.3 526 77.9
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 9.5e-223 776.9 531 77.4
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.6e-222 776.2 522 75.9
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 2.1e-222 775.8 523 78.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.2e-220 770.0 529 74.9
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 5.8e-220 767.7 523 76.3
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.7e-219 766.1 521 75.2
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.7e-219 766.1 524 75.8
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 2.9e-219 765.4 531 74.6
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 2.9e-219 765.4 520 75.2
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 3.7e-219 765.0 524 75.6
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 3.7e-219 765.0 526 74.9
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.9e-219 764.6 519 75.7
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-218 763.5 519 75.5
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.4e-218 763.1 538 73.8
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 5.4e-218 761.1 536 73.3
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 7.0e-218 760.8 547 72.2
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.6e-217 759.6 532 74.1
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 2.0e-217 759.2 522 75.9
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 7.8e-217 757.3 547 72.0
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.0e-216 756.9 523 75.9
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.3e-216 756.5 522 73.9
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.3e-216 756.5 522 73.9
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 1.7e-216 756.1 523 74.6
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 6.6e-216 754.2 532 72.9
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.1e-215 753.4 433 86.4
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.5e-215 753.1 525 73.0
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 6.2e-214 747.7 526 75.7
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 8.0e-214 747.3 525 74.7
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.8e-213 746.1 523 74.6
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.3e-211 740.0 530 72.3
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 2.4e-210 735.7 476 79.4
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 4.1e-210 734.9 520 72.3
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 4.1e-210 734.9 528 71.8
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 5.4e-210 734.6 527 71.3
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.3e-208 729.9 482 76.6
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.1e-207 726.9 522 73.2
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.5e-207 726.5 488 76.2
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.3e-207 725.3 522 72.6
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.1e-205 720.3 510 72.9
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.4e-205 719.9 527 71.7
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 9.9e-204 713.8 524 71.0
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.7e-203 713.0 524 71.0
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 8.3e-203 710.7 533 70.2
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 1.4e-202 709.9 461 77.2
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.9e-202 709.5 532 70.3
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 4.1e-202 708.4 433 80.1
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.1e-199 700.3 404 85.4
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 1.1e-197 693.7 535 66.0
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.4e-197 693.3 452 75.2
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.4e-197 693.3 527 67.9
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 3.1e-197 692.2 433 79.4
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 3.4e-196 688.7 526 67.9
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 5.8e-196 688.0 527 71.2
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 1.7e-195 686.4 523 67.9
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.8e-195 685.3 450 74.0
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.1e-194 683.7 549 64.5
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.6e-193 679.9 534 66.1
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 2.7e-193 679.1 526 67.5
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 2.7e-193 679.1 529 67.1
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 5.6e-191 671.4 525 67.8
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.3e-190 670.2 522 68.4
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 1.4e-189 666.8 528 65.7
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 4.0e-189 665.2 525 66.5
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.6e-188 662.5 434 78.6
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 9.9e-188 660.6 807 50.1
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 6.4e-187 657.9 532 64.1
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.1e-186 657.1 526 65.0
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.2e-185 653.7 528 64.8
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 3.5e-185 652.1 391 81.8
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 6.0e-185 651.4 525 64.4
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 7.9e-185 651.0 541 61.7
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.3e-184 650.2 527 63.4
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.3e-184 650.2 542 61.4
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.7e-184 649.8 527 63.4
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.7e-184 649.8 527 63.4
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 3.9e-184 648.7 528 64.4
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 3.9e-184 648.7 526 64.1
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 5.6e-183 644.8 485 69.5
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.3e-182 643.7 402 78.4
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 4.8e-182 641.7 526 63.5
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 5.3e-181 638.3 543 61.3
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-180 637.1 391 80.1
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 9.3e-178 627.5 496 66.5
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.7e-177 625.9 411 74.0
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 2.9e-171 605.9 495 63.2
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 9.3e-170 600.9 540 60.6
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.3e-166 590.5 579 56.1
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 8.2e-166 587.8 464 65.7
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 2.4e-165 586.3 508 61.2
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 5.3e-165 585.1 483 65.2
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.9e-162 576.6 476 63.2
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 4.2e-162 575.5 422 72.3
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 7.1e-162 574.7 469 64.2
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 6.1e-161 571.6 410 72.0
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.2e-156 557.4 359 78.8
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 3.2e-154 549.3 553 56.1
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.4e-149 533.1 460 62.6
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 1.2e-140 504.2 453 58.9
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.5e-140 503.8 481 55.7
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 7.5e-135 485.0 541 54.2
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 3.5e-132 476.1 451 54.8
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 7.7e-124 448.4 453 57.6
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 6.1e-121 438.7 350 64.6
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.2e-119 434.5 486 47.9
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.8e-118 429.9 453 51.0
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 6.6e-115 418.7 554 47.1
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 3.2e-101 373.2 279 70.3
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 6.6e-99 365.5 404 53.2
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 2.3e-91 340.5 300 59.0
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 3.9e-91 339.7 215 74.9
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 5.1e-91 339.3 444 41.7
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 4.3e-90 336.3 440 44.1
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.6e-84 317.8 379 50.1
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 8.9e-80 302.0 506 37.5
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 4.4e-71 273.1 230 65.7
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.2e-60 238.4 187 65.8
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.6e-57 228.0 158 69.6
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.7e-52 210.7 267 48.7
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.5e-50 204.9 164 64.6
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.8e-48 198.0 246 48.4
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 4.1e-48 196.8 264 46.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.3e-43 181.8 494 33.8
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.1e-40 172.2 174 58.6
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 2.4e-40 171.0 171 60.8
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.1e-40 170.2 375 36.0
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 2.0e-39 167.9 244 45.9
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 2.6e-39 167.5 115 71.3
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.2e-38 164.5 166 59.0
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-37 162.2 107 78.5
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 2.5e-37 161.0 237 46.4
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 3.2e-37 160.6 113 76.1
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.2e-37 160.6 259 42.5
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 3.6e-36 157.1 129 64.3
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 7.9e-36 156.0 96 81.2
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 3.9e-35 153.7 100 72.0
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 6.5e-30 136.3 111 64.9
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.4e-29 135.2 135 54.1
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.7e-28 130.2 95 66.3
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 2.3e-27 127.9 134 59.7
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 2.6e-26 124.4 82 75.6
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.3e-22 112.1 222 38.7
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.3e-22 112.1 222 38.7
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 6.5e-22 109.8 77 75.3
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 6.1e-20 103.2 232 33.6
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 1.2e-18 99.0 72 73.6
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 1.7e-17 95.1 119 51.3
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 2.4e-16 91.3 94 47.9
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.0e-15 88.2 62 71.0
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.7e-15 87.8 103 52.4
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 1.3e-14 85.5 153 32.0
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.2e-13 80.9 92 46.7
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 8.3e-09 66.2 38 78.9
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 8.3e-09 66.2 38 78.9
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 8.3e-09 66.2 38 78.9
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 8.3e-09 66.2 38 78.9
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 5.4e-08 63.5 45 68.9
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 5.4e-08 63.5 45 68.9
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 5.4e-08 63.5 45 68.9
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 2.7e-07 61.2 72 55.6


User provided reference genes

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