Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 3.7e-206 721.5 407 100.0
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.4e-157 559.3 408 73.8
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 2.3e-155 552.7 408 73.3
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 6.6e-155 551.2 409 73.8
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 4.9e-142 508.4 408 66.9
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 4.2e-141 505.4 408 67.9
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 4.2e-141 505.4 408 67.9
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 6.7e-139 498.0 406 67.5
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 6.7e-139 498.0 409 67.0
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 4.3e-138 495.4 410 66.6
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 4.3e-138 495.4 411 65.7
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 1.3e-137 493.8 409 65.8
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 4.8e-137 491.9 408 65.9
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 3.1e-136 489.2 409 65.3
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 3.1e-136 489.2 408 65.4
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.0e-136 488.8 413 65.9
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 6.9e-136 488.0 411 64.2
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 7.6e-135 484.6 408 64.7
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 3.8e-134 482.3 408 65.9
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 4.9e-134 481.9 413 63.0
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 6.4e-134 481.5 413 63.2
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 4.2e-133 478.8 410 64.6
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 1.2e-132 477.2 413 62.7
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 2.7e-132 476.1 417 61.6
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 4.6e-132 475.3 408 61.8
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.0e-131 474.2 404 66.1
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.0e-131 474.2 408 63.0
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 3.9e-131 472.2 415 62.9
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 9.6e-130 467.6 411 61.1
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 8.2e-129 464.5 419 59.9
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 1.8e-128 463.4 405 64.0
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 3.1e-128 462.6 454 59.5
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 4.0e-128 462.2 404 63.1
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 6.9e-128 461.5 353 72.0
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 2.6e-127 459.5 411 61.1
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 3.4e-127 459.1 409 61.6
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 6.5e-126 454.9 414 59.7
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 6.5e-126 454.9 403 63.0
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 8.4e-126 454.5 411 60.8
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 8.4e-126 454.5 411 60.1
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 4.2e-125 452.2 423 60.8
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 9.3e-125 451.1 409 61.1
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.6e-124 448.7 404 60.4
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.0e-124 448.4 406 61.6
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 1.3e-123 447.2 405 66.2
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.8e-123 446.8 422 66.6
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 5.1e-123 445.3 416 58.7
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 8.7e-123 444.5 417 60.2
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.9e-122 443.4 406 61.1
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 2.5e-122 443.0 407 59.0
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 3.3e-122 442.6 396 61.4
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 4.3e-122 442.2 410 61.0
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.7e-122 441.8 435 57.7
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 7.4e-122 441.4 398 62.3
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 9.7e-122 441.0 442 57.0
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.3e-121 440.7 406 60.3
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.6e-121 440.3 436 56.9
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 2.2e-121 439.9 409 60.6
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.4e-120 436.4 427 60.7
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 5.3e-120 435.3 408 59.6
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 2.6e-119 433.0 409 63.8
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 7.7e-119 431.4 450 56.0
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 1.0e-118 431.0 410 56.1
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.7e-118 430.3 395 62.0
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.0e-118 428.7 450 55.8
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 8.5e-118 427.9 334 69.5
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 8.5e-118 427.9 407 60.7
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.6e-116 423.7 452 54.9
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 2.1e-116 423.3 413 60.3
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 3.6e-116 422.5 395 59.5
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 4.6e-116 422.2 384 59.9
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 7.9e-116 421.4 400 57.0
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 3.3e-114 416.0 407 59.5
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 9.7e-114 414.5 374 64.2
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 8.2e-113 411.4 403 60.0
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 3.1e-112 409.5 409 55.0
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.5e-111 407.1 405 61.2
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 2.0e-111 406.8 357 61.6
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 7.7e-111 404.8 383 61.6
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 7.7e-111 404.8 506 48.8
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.1e-109 401.0 360 59.7
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 2.3e-107 393.3 412 55.6
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.1e-106 391.0 377 59.9
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 2.6e-106 389.8 407 58.5
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 9.1e-104 381.3 393 56.2
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 2.9e-102 376.3 406 51.5
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 1.4e-101 374.0 408 52.0
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 1.9e-101 373.6 406 51.0
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.2e-100 370.9 499 46.7
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 3.6e-100 369.4 407 53.6
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 8.0e-100 368.2 396 52.3
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 6.7e-99 365.2 406 50.2
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 5.7e-98 362.1 408 51.5
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 4.8e-97 359.0 406 50.0
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 5.3e-96 355.5 397 50.9
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 5.9e-95 352.1 404 51.2
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.9e-94 349.7 408 49.8
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 1.6e-92 344.0 408 48.8
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 2.3e-91 340.1 408 48.3
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 4.8e-89 332.4 408 48.0
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 6.3e-89 332.0 411 48.4
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 6.3e-89 332.0 430 47.0
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.4e-88 330.1 408 47.3
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 2.4e-88 330.1 377 54.6
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.9e-86 323.2 331 58.0
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 8.5e-86 321.6 431 45.0
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 1.1e-80 304.7 291 60.5
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 1.0e-78 298.1 373 50.1
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 4.7e-76 289.3 410 46.3
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 2.3e-62 243.8 320 49.1
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.9e-62 243.0 350 45.1
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 1.1e-59 235.0 358 44.4
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 3.1e-59 233.4 226 56.2
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 5.8e-58 229.2 454 37.7
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 5.8e-58 229.2 350 43.1
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 4.9e-57 226.1 268 53.4
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 1.9e-56 224.2 232 52.6
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.5e-53 214.5 438 36.3
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 1.1e-40 171.8 428 32.2
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 2.5e-37 160.6 128 63.3
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.1e-36 157.5 166 57.2
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.1e-35 155.2 111 65.8
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 5.4e-32 142.9 353 32.6
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 9.6e-29 132.1 136 55.1
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 2.4e-27 127.5 152 46.7
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 2.4e-27 127.5 152 46.7
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.6e-23 114.8 276 33.0
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.9e-22 110.2 150 47.3
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 4.3e-21 106.7 73 80.8
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.6e-15 88.2 59 78.0
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 3.0e-14 84.0 98 55.1
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.1e-13 82.0 155 41.3
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 9.6e-13 79.0 122 41.8
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 1.8e-11 74.7 40 72.5
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 6.9e-11 72.8 88 52.3
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 5.8e-10 69.7 103 40.8
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.6e-07 61.6 42 76.2
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 2.1e-07 61.2 74 54.1
MELO3C030134.2 Cucumis melo HOM05D005133 ORTHO05D006685 7.9e-07 59.3 52 65.4
MELO3C030860.2 Cucumis melo HOM05D005133 ORTHO05D006685 8.7e-06 55.8 56 64.3
MELO3C031967.2 Cucumis melo HOM05D005133 ORTHO05D165940 8.7e-06 55.8 56 62.5


User provided reference genes

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