Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 8.5e-73 277.3 188 100.0
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 1.2e-26 124.0 132 60.6
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 2.7e-26 122.9 140 58.6
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 4.6e-26 122.1 136 55.1
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 1.0e-25 120.9 135 54.1
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 5.6e-24 115.2 108 63.0
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.2e-23 114.0 137 50.4
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 6.2e-23 111.7 121 54.5
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 1.1e-22 110.9 118 56.8
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 1.1e-22 110.9 133 59.4
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 1.4e-22 110.5 141 48.9
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 1.8e-22 110.2 101 61.4
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 1.8e-22 110.2 117 58.1
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 2.4e-22 109.8 145 50.3
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 6.9e-22 108.2 128 53.9
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.2e-21 107.5 137 48.9
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 1.5e-21 107.1 137 51.1
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 1.5e-21 107.1 119 54.6
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 2.0e-21 106.7 129 55.0
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 5.8e-21 105.1 116 59.5
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 1.3e-20 104.0 134 48.5
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 2.2e-20 103.2 121 56.2
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.2e-20 103.2 121 56.2
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.2e-20 103.2 121 56.2
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 6.4e-20 101.7 128 52.3
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 8.4e-20 101.3 136 47.8
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.4e-19 100.5 141 48.2
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 1.9e-19 100.1 111 52.3
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 2.4e-19 99.8 105 54.3
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 2.4e-19 99.8 122 50.0
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 4.2e-19 99.0 111 56.8
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 5.4e-19 98.6 128 52.3
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 7.1e-19 98.2 128 49.2
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 9.3e-19 97.8 115 56.5
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 9.3e-19 97.8 112 57.1
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 9.3e-19 97.8 128 52.3
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 2.1e-18 96.7 144 45.8
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 2.1e-18 96.7 106 55.7
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 4.6e-18 95.5 130 50.8
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 1.7e-17 93.6 117 49.6
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 2.3e-17 93.2 106 53.8
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 2.3e-17 93.2 108 50.9
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 3.0e-17 92.8 84 66.7
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 5.1e-17 92.0 138 46.4
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 6.6e-17 91.7 119 51.3
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 6.6e-17 91.7 129 50.4
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 8.7e-17 91.3 83 65.1
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 8.7e-17 91.3 139 47.5
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 8.7e-17 91.3 122 49.2
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 1.9e-16 90.1 115 58.3
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 2.5e-16 89.7 117 51.3
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 3.3e-16 89.4 111 55.0
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 5.6e-16 88.6 104 53.8
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 5.6e-16 88.6 134 44.0
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 9.6e-16 87.8 125 52.8
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 2.1e-15 86.7 96 50.0
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 2.1e-15 86.7 115 47.0
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 3.6e-15 85.9 126 46.0
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 4.8e-15 85.5 121 48.8
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 6.2e-15 85.1 78 57.7
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 6.2e-15 85.1 98 52.0
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 8.1e-15 84.7 131 43.5
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 1.4e-14 84.0 108 48.1
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 1.4e-14 84.0 114 46.5
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 1.8e-14 83.6 99 53.5
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 1.8e-14 83.6 141 43.3
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 2.4e-14 83.2 98 53.1
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 2.4e-14 83.2 115 46.1
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 2.4e-14 83.2 115 46.1
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 9.9e-13 77.8 123 40.7
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 1.7e-12 77.0 80 61.2
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 2.2e-12 76.6 78 59.0
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 2.9e-12 76.3 111 50.5
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 4.9e-12 75.5 114 45.6
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 6.4e-12 75.1 104 51.9
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 6.4e-12 75.1 112 48.2
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.1e-11 74.3 106 47.2
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 1.4e-11 73.9 141 43.3
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 1.4e-11 73.9 104 51.0
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 1.9e-11 73.6 103 43.7
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 1.9e-11 73.6 100 49.0
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 1.9e-11 73.6 97 51.5
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 2.1e-10 70.1 100 54.0
THA.LOC104799749 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 2.1e-10 70.1 105 46.7
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 2.7e-10 69.7 108 48.1
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 4.6e-10 68.9 123 41.5
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 4.6e-10 68.9 104 47.1
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 6.0e-10 68.6 105 44.8
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 6.0e-10 68.6 101 46.5
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 7.9e-10 68.2 107 45.8
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.8e-09 67.0 93 45.2
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.8e-09 67.0 108 44.4
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 2.3e-09 66.6 107 44.9
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 2.3e-09 66.6 100 49.0
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 3.0e-09 66.2 97 47.4
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 3.0e-09 66.2 101 40.6
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 5.1e-09 65.5 68 54.4
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 5.1e-09 65.5 99 47.5
AL5G33230 Arabidopsis lyrata HOM05D006872 ORTHO05D006261 6.7e-09 65.1 99 49.5
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 6.7e-09 65.1 97 48.5
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 6.7e-09 65.1 107 44.9
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 8.7e-09 64.7 78 56.4
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 1.1e-08 64.3 105 42.9
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 1.9e-08 63.5 121 37.2
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 4.3e-08 62.4 69 53.6
CARHR162280 Cardamine hirsuta HOM05D006872 ORTHO05D006261 4.3e-08 62.4 99 46.5
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 4.3e-08 62.4 67 56.7
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 5.6e-08 62.0 70 54.3
AL6G16320 Arabidopsis lyrata HOM05D010494 ORTHO05D006261 7.4e-08 61.6 113 38.9
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 9.6e-08 61.2 64 53.1
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 9.6e-08 61.2 84 47.6
Medtr2g102560 Medicago truncatula HOM05D006872 ORTHO05D006261 1.3e-07 60.8 60 63.3
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 2.1e-07 60.1 103 44.7
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.1e-07 60.1 93 45.2
BcaC06g32348 Brassica carinata HOM05D010494 ORTHO05D006261 2.8e-07 59.7 115 37.4
BcaC06g32361 Brassica carinata HOM05D010494 ORTHO05D006261 2.8e-07 59.7 115 37.4
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 2.8e-07 59.7 96 46.9
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 2.8e-07 59.7 96 46.9
Medtr4g085050 Medicago truncatula HOM05D006872 ORTHO05D006261 2.8e-07 59.7 61 62.3
Prupe.6G139500 Prunus persica HOM05D021165 ORTHO05D006261 3.7e-07 59.3 94 39.4
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 3.7e-07 59.3 77 45.5
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 4.8e-07 58.9 64 51.6
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 4.8e-07 58.9 98 41.8
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.8e-07 58.9 98 41.8
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.8e-07 58.9 98 41.8
RcHm_v2.0_Chr3g0488241 Rosa chinensis HOM05D006872 ORTHO05D006261 6.2e-07 58.5 60 51.7
BcaC02g09248 Brassica carinata HOM05D006872 ORTHO05D006261 1.1e-06 57.8 99 47.5
BolC9t59798H Brassica oleracea HOM05D010494 ORTHO05D006261 1.1e-06 57.8 96 40.6
BcaB02g08564 Brassica carinata HOM05D006872 ORTHO05D006261 1.4e-06 57.4 96 49.0
C04p40490 Brassica napus HOM05D006872 ORTHO05D006261 1.4e-06 57.4 99 47.5
BolC4t25629H Brassica oleracea HOM05D006872 ORTHO05D006261 1.4e-06 57.4 99 47.5
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 1.4e-06 57.4 62 58.1
Aa31LG10G7560 Aethionema arabicum HOM05D006872 ORTHO05D006261 1.8e-06 57.0 102 44.1
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 2.4e-06 56.6 65 52.3
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 3.1e-06 56.2 96 41.7
Migut.J00684 Erythranthe guttata HOM05D006872 ORTHO05D006261 4.0e-06 55.8 93 41.9
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 4.0e-06 55.8 65 50.8
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 4.0e-06 55.8 54 61.1
Carub.0006s0518 Capsella rubella HOM05D010494 ORTHO05D006261 5.3e-06 55.5 90 41.1
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 5.3e-06 55.5 55 65.5
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 6.9e-06 55.1 85 44.7
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 9.0e-06 54.7 54 61.1


User provided reference genes

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