Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p036911 Quercus lobata HOM05D008136 ORTHO05D002052 7.8e-149 530.4 261 100.0
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 5.4e-41 172.2 291 38.8
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 2.5e-30 136.7 280 33.6
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 3.3e-30 136.3 221 37.1
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 1.6e-29 134.0 289 35.3
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 2.2e-26 123.6 192 35.9
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 7.8e-24 115.2 223 30.0
Potri.016G071200 Populus trichocarpa HOM05D038355 ORTHO05D002052 1.1e-22 111.3 236 29.2
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 3.3e-22 109.8 173 33.5
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 5.6e-22 109.0 224 32.6
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 5.6e-22 109.0 225 33.8
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 7.3e-22 108.6 209 31.6
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 9.5e-22 108.2 236 32.6
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.6e-21 107.5 200 31.5
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 3.1e-20 103.2 184 34.2
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 3.1e-20 103.2 184 32.6
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 6.8e-20 102.1 217 29.0
Nn2g14283 Nelumbo nucifera HOM05D002687 ORTHO05D002052 6.8e-20 102.1 228 32.5
AL5G33110 Arabidopsis lyrata HOM05D008136 ORTHO05D002052 8.9e-20 101.7 184 33.7
Thhalv10010982m.g Eutrema salsugineum HOM05D008136 ORTHO05D002052 8.9e-20 101.7 256 28.9
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 1.2e-19 101.3 236 29.7
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 1.2e-19 101.3 236 29.7
Sp5g09840 Schrenkiella parvula HOM05D008136 ORTHO05D002052 1.2e-19 101.3 212 32.1
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 2.0e-19 100.5 237 30.4
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 2.0e-19 100.5 237 30.4
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 2.0e-19 100.5 237 30.4
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 2.6e-19 100.1 181 33.1
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 4.4e-19 99.4 193 34.7
THA.LOC104825213 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 2.2e-18 97.1 244 30.7
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 2.9e-18 96.7 207 30.9
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 2.9e-18 96.7 198 27.3
CANSAT64G0025 Cannabis sativa HOM05D008136 ORTHO05D002052 6.4e-18 95.5 172 32.6
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 8.3e-18 95.1 223 26.9
BcaC06g32916 Brassica carinata HOM05D008136 ORTHO05D002052 1.9e-17 94.0 218 31.2
THA.LOC104823630 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 1.9e-17 94.0 222 30.2
BcaC06g33391 Brassica carinata HOM05D008136 ORTHO05D002052 7.1e-17 92.0 193 32.6
C07p46980 Brassica napus HOM05D008136 ORTHO05D002052 7.1e-17 92.0 193 32.6
BolC7t45215H Brassica oleracea HOM05D008136 ORTHO05D002052 7.1e-17 92.0 193 32.6
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 9.2e-17 91.7 179 26.8
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 9.2e-17 91.7 228 30.3
A03p48880 Brassica napus HOM05D008136 ORTHO05D002052 3.5e-16 89.7 183 32.2
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 4.6e-16 89.4 213 30.5
BraA03t13990Z Brassica rapa HOM05D008136 ORTHO05D002052 1.0e-15 88.2 183 31.7
CiPaw.10G016800 Carya illinoinensis HOM05D008136 ORTHO05D002052 1.0e-15 88.2 160 31.9
Gohir.D09G131400 Gossypium hirsutum HOM05D008136 ORTHO05D002052 1.7e-15 87.4 176 30.1
Gorai.006G150000 Gossypium raimondii HOM05D008136 ORTHO05D002052 1.7e-15 87.4 176 30.1
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.3e-15 87.0 170 30.0
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 8.6e-15 85.1 269 26.4
Prupe.7G096900 Prunus persica HOM05D018155 ORTHO05D020655 2.5e-14 83.6 204 28.4
Medtr2g087000 Medicago truncatula HOM05D002687 ORTHO05D002052 3.3e-14 83.2 194 29.4
Rhsim03G0065900 Rhododendron simsii HOM05D008136 ORTHO05D002052 3.3e-14 83.2 218 29.8
Prupe.7G097000 Prunus persica HOM05D002687 ORTHO05D002052 1.6e-13 80.9 227 24.7
Ciclev10013405m.g Citrus clementina HOM05D008136 ORTHO05D002052 2.8e-13 80.1 245 28.2
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.6e-13 79.7 255 28.2
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 6.2e-13 79.0 248 26.2
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 8.1e-13 78.6 230 27.0
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 1.1e-12 78.2 227 27.3
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.8e-12 77.4 220 25.5
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 1.8e-12 77.4 219 27.4
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 1.8e-12 77.4 229 23.1
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 2.3e-12 77.0 248 26.2
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 2.3e-12 77.0 243 27.6
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.3e-12 77.0 173 31.2
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 3.1e-12 76.6 195 30.3
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 4.0e-12 76.3 230 27.4
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 6.8e-12 75.5 260 23.5
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 6.8e-12 75.5 218 28.4
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 6.8e-12 75.5 247 27.5
Prupe.7G096800 Prunus persica HOM05D009874 ORTHO05D010825 6.8e-12 75.5 206 29.1
Sed0009075 Sechium edule HOM05D002687 ORTHO05D002052 6.8e-12 75.5 247 25.5
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 8.9e-12 75.1 175 26.9
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 8.9e-12 75.1 176 30.7
Oeu009048.1 Olea europaea HOM05D002687 ORTHO05D002052 1.2e-11 74.7 250 26.8
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 1.5e-11 74.3 242 26.4
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.5e-11 74.3 197 28.9
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.5e-11 74.3 197 28.9
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 2.0e-11 73.9 256 25.0
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 2.6e-11 73.6 221 26.2
Lj1g0025222 Lotus japonicus HOM05D008136 ORTHO05D002052 2.6e-11 73.6 231 25.5
RcHm_v2.0_Chr3g0475711 Rosa chinensis HOM05D002687 ORTHO05D002052 2.6e-11 73.6 245 26.9
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 4.4e-11 72.8 251 25.5
Lalb_Chr14g0376011 Lupinus albus HOM05D002687 ORTHO05D002052 4.4e-11 72.8 201 26.4
MD14G1037700 Malus domestica HOM05D018155 ORTHO05D020655 4.4e-11 72.8 264 26.9
Oeu055534.1 Olea europaea HOM05D012176 ORTHO05D014468 4.4e-11 72.8 171 31.6
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 7.6e-11 72.0 224 25.4
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 9.9e-11 71.6 232 23.3
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 1.3e-10 71.2 212 27.4
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 1.7e-10 70.9 199 28.6
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 2.2e-10 70.5 217 28.1
Ca_09051_v3 Cicer arietinum L. HOM05D008136 ORTHO05D002052 2.2e-10 70.5 204 25.5
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 2.9e-10 70.1 200 26.5
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 2.9e-10 70.1 177 27.1
FAN14G3199 Fragaria x ananassa HOM05D029328 ORTHO05D002052 3.8e-10 69.7 177 27.1
Gohir.A09G134801 Gossypium hirsutum HOM05D008136 ORTHO05D002052 3.8e-10 69.7 134 28.4
Lalb_Chr06g0172611 Lupinus albus HOM05D008136 ORTHO05D002052 3.8e-10 69.7 221 23.1
Dinv31751 Davidia involucrata HOM05D002687 ORTHO05D002052 4.9e-10 69.3 139 29.5
FvH4_6g20177 Fragaria vesca HOM05D002687 ORTHO05D002052 4.9e-10 69.3 189 26.5
Prupe.7G048100 Prunus persica HOM05D010052 ORTHO05D010666 1.1e-09 68.2 195 25.6
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 1.1e-09 68.2 180 28.3
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 1.1e-09 68.2 230 27.0
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 1.4e-09 67.8 217 24.9
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 1.4e-09 67.8 209 28.7
PGR004G1626 Punica granatum HOM05D008136 ORTHO05D002052 1.9e-09 67.4 247 27.1
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 1.9e-09 67.4 234 23.1
TPR.G4231 Trifolium pratense HOM05D002687 ORTHO05D002052 1.9e-09 67.4 192 26.0
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 2.4e-09 67.0 232 26.3
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 2.4e-09 67.0 232 26.7
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.2e-09 66.6 218 26.1
Psat3g029080 Pisum sativum HOM05D008136 ORTHO05D002052 3.2e-09 66.6 198 27.3
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 4.1e-09 66.2 232 28.0
Medtr7g106130 Medicago truncatula HOM05D008136 ORTHO05D002052 4.1e-09 66.2 225 28.9
Lj1g0008918 Lotus japonicus HOM05D017388 ORTHO05D010666 5.4e-09 65.9 151 30.5
Glyma.10G080800 Glycine max HOM05D008136 ORTHO05D002052 7.1e-09 65.5 216 21.3
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 9.2e-09 65.1 177 26.0
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 1.2e-08 64.7 233 26.2
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 1.6e-08 64.3 244 25.0
FAN14G1910 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.6e-08 64.3 155 25.2
CARHR119770 Cardamine hirsuta HOM05D002687 ORTHO05D002052 2.1e-08 63.9 210 26.2
Prupe.7G096500 Prunus persica HOM05D010052 ORTHO05D010666 2.7e-08 63.5 172 27.9
FvH4_6g24970 Fragaria vesca HOM05D010052 ORTHO05D010666 3.5e-08 63.2 199 24.1
Lj3g0009280 Lotus japonicus HOM05D002687 ORTHO05D002052 3.5e-08 63.2 213 24.9
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 4.6e-08 62.8 202 24.8
VMungo1080G0268 Vigna mungo HOM05D002687 ORTHO05D002052 4.6e-08 62.8 200 22.5
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 6.0e-08 62.4 217 24.4
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 6.0e-08 62.4 217 24.4
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 6.0e-08 62.4 217 24.4
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 6.0e-08 62.4 216 23.6
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 6.0e-08 62.4 201 21.9
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 7.8e-08 62.0 217 24.0
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 7.8e-08 62.0 207 29.0
Atru.chr8.1380 Acer truncatum HOM05D008136 ORTHO05D002052 1.0e-07 61.6 238 25.6
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 1.0e-07 61.6 197 25.4
Ciclev10029176m.g Citrus clementina HOM05D002687 ORTHO05D002052 1.0e-07 61.6 241 23.7
FAN09G4754 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.3e-07 61.2 215 23.7
Oeu052622.2 Olea europaea HOM05D022101 ORTHO05D022209 1.3e-07 61.2 222 29.3
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 1.3e-07 61.2 190 26.8
TPR.G35558 Trifolium pratense HOM05D008136 ORTHO05D002052 1.3e-07 61.2 218 23.4
TPR.G35571 Trifolium pratense HOM05D002687 ORTHO05D002052 1.3e-07 61.2 168 28.0
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 2.3e-07 60.5 190 28.4
MD07G1151300 Malus domestica HOM05D010052 ORTHO05D010666 2.3e-07 60.5 239 22.6
Phvul.005G120800 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 2.3e-07 60.5 203 22.7
CSS0036580 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 3.0e-07 60.1 192 24.0
CiPaw.14G095600 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.9e-07 59.7 229 24.0
CiPaw.14G095800 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.9e-07 59.7 229 24.0
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 3.9e-07 59.7 194 21.6
MD12G1087900 Malus domestica HOM05D010052 ORTHO05D010666 5.1e-07 59.3 223 23.3
PGR142G0074 Punica granatum HOM05D008136 ORTHO05D002052 5.1e-07 59.3 191 25.1
SGA_v2.0_scaffold100G29631 Striga asiatica HOM05D002687 ORTHO05D002052 5.1e-07 59.3 220 26.4
TPR.G35568 Trifolium pratense HOM05D017388 ORTHO05D010666 5.1e-07 59.3 154 28.6
VMungo0720G0515 Vigna mungo HOM05D008136 ORTHO05D002052 5.1e-07 59.3 182 24.7
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 6.6e-07 58.9 222 24.8
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 6.6e-07 58.9 196 27.0
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 6.6e-07 58.9 213 26.8
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 1.1e-06 58.2 171 24.6
DCAR_003063 Daucus carota HOM05D008136 ORTHO05D014468 3.3e-06 56.6 242 24.0
BcaC06g32917 Brassica carinata HOM05D008136 ORTHO05D002052 4.3e-06 56.2 80 37.5
RcHm_v2.0_Chr3g0475751 Rosa chinensis HOM05D009874 ORTHO05D010825 4.3e-06 56.2 209 26.3
Migut.B00865 Erythranthe guttata HOM05D012176 ORTHO05D014468 5.6e-06 55.8 190 25.8
FvH4_6g20210 Fragaria vesca HOM05D009874 ORTHO05D010825 5.6e-06 55.8 206 24.3
FAN14G2012 Fragaria x ananassa HOM05D009874 ORTHO05D010825 5.6e-06 55.8 206 24.3


User provided reference genes

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