Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p036825 Quercus lobata HOM05D007097 ORTHO05D008131 4.3e-115 418.3 263 100.0
Haze_20191 Corylus avellana HOM05D007097 ORTHO05D008131 1.6e-61 240.4 271 55.7
Cfa020025 Carpinus fangiana HOM05D007097 ORTHO05D008131 2.0e-59 233.4 275 55.6
CiPaw.09G020600 Carya illinoinensis HOM05D007097 ORTHO05D008131 4.1e-57 225.7 272 54.4
TWI74G0793 Tripterygium wilfordii HOM05D007097 ORTHO05D008131 8.6e-47 191.4 268 44.8
Cpa.g.sc104.37 Carica papaya HOM05D007097 ORTHO05D008131 2.6e-43 179.9 266 42.9
MD12G1039700 Malus domestica HOM05D007097 ORTHO05D008131 9.2e-41 171.4 270 41.1
Prupe.7G095200 Prunus persica HOM05D007097 ORTHO05D008131 1.0e-39 167.9 271 41.3
MD14G1038300 Malus domestica HOM05D007097 ORTHO05D008131 1.3e-39 167.5 272 40.1
ClCG10G018390 Citrullus lanatus HOM05D007097 ORTHO05D008131 1.9e-38 163.7 271 44.6
Gorai.006G149800 Gossypium raimondii HOM05D007097 ORTHO05D008131 2.8e-37 159.8 268 36.6
FAN05G0285 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.4e-36 157.5 265 39.6
RcHm_v2.0_Chr3g0475851 Rosa chinensis HOM05D007097 ORTHO05D008131 1.4e-36 157.5 272 44.1
FvH4_6g20260 Fragaria vesca HOM05D007097 ORTHO05D008131 4.0e-36 156.0 267 37.8
COL.COLO4_29582 Corchorus olitorius HOM05D007097 ORTHO05D008131 5.2e-36 155.6 270 37.0
FAN02G1136 Fragaria x ananassa HOM05D007097 ORTHO05D008131 5.2e-36 155.6 265 38.1
FAN05G2168 Fragaria x ananassa HOM05D007097 ORTHO05D008131 3.4e-35 152.9 264 37.5
Thecc.05G103600 Theobroma cacao HOM05D007097 ORTHO05D008131 4.4e-35 152.5 271 38.4
FAN14G0555 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.3e-34 151.0 266 37.2
FAN09G3875 Fragaria x ananassa HOM05D007097 ORTHO05D008131 2.4e-33 146.7 265 37.0
Gohir.D09G131100 Gossypium hirsutum HOM05D007097 ORTHO05D008131 2.4e-33 146.7 267 34.5
Gohir.A09G134600 Gossypium hirsutum HOM05D007097 ORTHO05D008131 7.1e-33 145.2 267 35.2
Sed0025399 Sechium edule HOM05D007097 ORTHO05D008131 1.2e-32 144.4 272 41.2
Manes.08G033000 Manihot esculenta HOM05D007097 ORTHO05D008131 1.6e-32 144.1 260 37.7
Lalb_Chr25g0288011 Lupinus albus HOM05D007097 ORTHO05D008131 2.7e-32 143.3 258 36.4
Sed0014531 Sechium edule HOM05D007097 ORTHO05D008131 3.5e-32 142.9 272 44.1
Lalb_Chr01g0017871 Lupinus albus HOM05D007097 ORTHO05D008131 1.3e-31 141.0 258 36.0
Manes.09G044900 Manihot esculenta HOM05D007097 ORTHO05D008131 6.6e-31 138.7 264 36.0
Nn6g34702 Nelumbo nucifera HOM05D007097 ORTHO05D008131 6.6e-31 138.7 288 35.8
MELO3C009534.2 Cucumis melo HOM05D007097 ORTHO05D008131 2.1e-29 133.7 271 45.8
CsaV3_3G037910 Cucumis sativus L. HOM05D007097 ORTHO05D008131 2.1e-29 133.7 271 45.8
Lalb_Chr20g0111401 Lupinus albus HOM05D007097 ORTHO05D008131 1.1e-28 131.3 258 34.9
Glyma.03G201700 Glycine max HOM05D007097 ORTHO05D008131 2.4e-28 130.2 258 35.3
Sabra06G0157000 Salix brachista HOM05D007097 ORTHO05D008131 3.4e-27 126.3 277 34.3
Ciclev10012818m.g Citrus clementina HOM05D007097 ORTHO05D008131 1.9e-25 120.6 259 47.1
TAR633G2246 Trochodendron aralioides HOM05D007097 ORTHO05D008131 4.2e-25 119.4 272 33.5
Actinidia37742 Actinidia chinensis HOM05D007097 ORTHO05D008131 5.4e-25 119.0 275 31.3
Glyma.10G081100 Glycine max HOM05D007097 ORTHO05D008131 1.6e-24 117.5 265 33.6
VMungo0720G1866 Vigna mungo HOM05D007097 ORTHO05D008131 3.0e-23 113.2 264 31.4
Nn2g14294 Nelumbo nucifera HOM05D007097 ORTHO05D008131 2.5e-22 110.2 269 32.3
Atru.chr8.1373 Acer truncatum HOM05D007097 ORTHO05D008131 2.1e-21 107.1 255 38.8
Dinv31755 Davidia involucrata HOM05D007097 ORTHO05D008131 3.6e-21 106.3 271 32.8
Glyma.02G197300 Glycine max HOM05D007097 ORTHO05D008131 3.6e-21 106.3 260 46.9
Cc06_g06500 Coffea canephora HOM05D007097 ORTHO05D008131 1.8e-20 104.0 300 30.3
TAR623G1722 Trochodendron aralioides HOM05D007097 ORTHO05D008131 2.4e-20 103.6 276 29.7
SGA_v2.0_scaffold31G12846 Striga asiatica HOM05D007097 ORTHO05D008131 5.8e-19 99.0 285 33.0
Ca_11701_v3 Cicer arietinum L. HOM05D007097 ORTHO05D008131 1.7e-18 97.4 270 28.9
Lj5g0024854 Lotus japonicus HOM05D007097 ORTHO05D008131 1.7e-18 97.4 275 29.8
Sopen10g032440 Solanum pennellii HOM05D007097 ORTHO05D008131 2.2e-18 97.1 282 30.5
Phvul.007G268300 Phaseolus vulgaris HOM05D007097 ORTHO05D008131 2.9e-18 96.7 263 43.0
Solyc10g081930.1 Solanum lycopersicum HOM05D007097 ORTHO05D008131 2.9e-18 96.7 282 30.5
Rhsim03G0065800 Rhododendron simsii HOM05D007097 ORTHO05D008131 2.4e-17 93.6 264 32.6
Medtr1g057600 Medicago truncatula HOM05D007097 ORTHO05D008131 9.3e-17 91.7 265 29.1
CAN.G1245.7 Capsicum annuum HOM05D007097 ORTHO05D008131 2.1e-16 90.5 268 27.6
DCAR_020707 Daucus carota HOM05D007097 ORTHO05D008131 2.7e-16 90.1 257 32.3
Nitab4.5_0000020g0090 Nicotiana tabacum HOM05D007097 ORTHO05D008131 3.5e-16 89.7 282 28.7
HPP92_025143 Vanilla planifolia HOM05D007097 ORTHO05D008131 3.5e-16 89.7 292 27.4
Migut.J00707 Erythranthe guttata HOM05D007097 ORTHO05D008131 6.0e-16 89.0 285 30.2
PGSC0003DMG400028148 Solanum tuberosum HOM05D007097 ORTHO05D008131 7.9e-16 88.6 281 30.2
HPP92_026079 Vanilla planifolia HOM05D007097 ORTHO05D008131 7.9e-16 88.6 288 27.4
Solyc01g007190.3 Solanum lycopersicum HOM05D007097 ORTHO05D008131 1.3e-15 87.8 266 29.3
SGA_v2.0_scaffold13G06627 Striga asiatica HOM05D007097 ORTHO05D008131 2.3e-15 87.0 295 31.5
GSVIVG01033951001 Vitis vinifera HOM05D009231 ORTHO05D010800 2.3e-15 87.0 131 40.5
Peaxi162Scf00211g00105 Petunia axillaris HOM05D007097 ORTHO05D008131 3.0e-15 86.7 273 27.8
Sopen01g003170 Solanum pennellii HOM05D007097 ORTHO05D008131 3.0e-15 86.7 266 27.8
PGSC0003DMG400016423 Solanum tuberosum HOM05D007097 ORTHO05D008131 3.9e-15 86.3 276 27.2
Psat6g114400 Pisum sativum HOM05D007097 ORTHO05D008131 8.7e-15 85.1 269 27.9
Nitab4.5_0005325g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 4.3e-14 82.8 88 50.0
Nitab4.5_0001287g0020 Nicotiana tabacum HOM05D007097 ORTHO05D008131 1.3e-13 81.3 92 45.7
Peaxi162Scf00388g01015 Petunia axillaris HOM05D007097 ORTHO05D008131 2.1e-13 80.5 87 50.6
Sc02g0000610 Simmondsia chinensis HOM05D007097 ORTHO05D008131 2.1e-13 80.5 84 46.4
HanXRQChr09g0239941 Helianthus annuus HOM05D007097 ORTHO05D008131 1.1e-12 78.2 264 30.3
Nn1g01483 Nelumbo nucifera HOM05D007097 ORTHO05D008131 2.4e-12 77.0 80 52.5
Os04g0685700 Oryza sativa ssp. japonica HOM05D007097 ORTHO05D008131 3.1e-12 76.6 261 36.8
Lsat_1_v5_gn_2_55400 Lactuca sativa HOM05D007097 ORTHO05D008131 4.0e-12 76.3 267 27.0
Actinidia37743 Actinidia chinensis HOM05D007097 ORTHO05D008131 6.9e-12 75.5 82 47.6
ATR0772G224 Amborella trichopoda HOM05D007097 ORTHO05D008131 9.0e-12 75.1 254 26.4
AUR62006282 Chenopodium quinoa HOM05D007097 ORTHO05D008131 1.2e-11 74.7 301 28.6
Eucgr.K02617 Eucalyptus grandis HOM05D007097 ORTHO05D008131 2.0e-11 73.9 274 33.6
Lsat_1_v5_gn_1_57020 Lactuca sativa HOM05D007097 ORTHO05D008131 2.0e-11 73.9 258 27.5
TPR.G2776 Trifolium pratense HOM05D007097 ORTHO05D008131 3.4e-11 73.2 295 24.7
SalBow5G4860 Salvia bowleyana HOM05D007097 ORTHO05D008131 4.5e-11 72.8 90 46.7
Ah.08g210070 Amaranthus hybridus HOM05D007097 ORTHO05D008131 1.3e-10 71.2 264 27.3
AUR62026332 Chenopodium quinoa HOM05D007097 ORTHO05D008131 2.9e-10 70.1 250 26.8
HanXRQChr01g0025661 Helianthus annuus HOM05D007097 ORTHO05D008131 2.9e-10 70.1 269 24.2
DCAR_009176 Daucus carota HOM05D007097 ORTHO05D008131 3.8e-10 69.7 254 28.3
unitig_22.g5144 Utricularia gibba HOM05D007097 ORTHO05D008131 8.4e-10 68.6 84 42.9
Ah.08g210060 Amaranthus hybridus HOM05D007097 ORTHO05D008131 1.4e-09 67.8 81 45.7
unitig_578.g16474 Utricularia gibba HOM05D007097 ORTHO05D008131 3.2e-09 66.6 82 42.7
Nitab4.5_0010913g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 4.2e-09 66.2 82 41.5
ECA248G2186 Erigeron canadensis HOM05D007097 ORTHO05D008131 2.7e-08 63.5 276 25.0
SGA_v2.0_scaffold35G14013 Striga asiatica HOM05D007097 ORTHO05D008131 3.5e-08 63.2 82 37.8
Nn2g13712 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.3e-07 61.2 87 46.0
Nn8g40734 Nelumbo nucifera HOM05D007097 ORTHO05D008131 3.0e-07 60.1 70 44.3
Zm00001eb434190 Zea mays HOM05D007097 ORTHO05D008131 1.9e-06 57.4 264 26.1
Zm00001eb065580 Zea mays HOM05D007097 ORTHO05D008131 5.6e-06 55.8 270 27.4
Actinidia06180 Actinidia chinensis HOM05D000517 ORTHO05D008131 7.4e-06 55.5 244 25.8


User provided reference genes

Program Settings