Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 0.0e+00 1712.2 860 100.0
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 0.0e+00 1352.8 886 77.2
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 0.0e+00 1338.2 884 77.4
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 0.0e+00 1218.4 874 72.4
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 0.0e+00 1142.9 892 66.4
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 0.0e+00 1132.1 876 66.1
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 0.0e+00 1124.8 939 65.7
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 0.0e+00 1103.2 885 64.9
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 0.0e+00 1101.3 848 69.0
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1100.9 875 64.1
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1092.0 883 63.1
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1090.1 875 63.7
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1088.6 883 63.0
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 0.0e+00 1082.8 881 63.3
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.2e-311 1072.8 882 62.9
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 4.1e-311 1071.2 882 62.8
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.6e-310 1068.5 882 62.7
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.9e-306 1054.7 883 61.6
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.6e-305 1050.8 883 61.3
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 2.2e-301 1038.9 890 62.4
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.9e-300 1035.8 869 62.0
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.0e-298 1030.0 879 62.2
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 6.7e-298 1027.3 878 60.9
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 8.7e-298 1026.9 838 61.8
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.1e-297 1026.5 854 63.5
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 2.8e-296 1021.9 748 68.7
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 2.8e-296 1021.9 878 60.9
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.8e-296 1021.1 879 61.9
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.2e-293 1012.3 884 60.4
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.9e-292 1009.2 878 61.2
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 2.3e-290 1002.3 881 60.6
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 2.8e-288 995.3 891 59.3
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 6.3e-288 994.2 743 68.0
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.4e-287 993.0 900 58.6
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 9.0e-287 990.3 917 57.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.2e-286 989.9 881 59.6
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.9e-285 985.3 886 58.4
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.2e-283 979.9 882 58.5
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 2.1e-283 979.2 882 58.4
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 2.3e-282 975.7 912 58.1
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 3.0e-282 975.3 945 55.1
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 4.3e-281 971.5 893 57.3
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 4.2e-276 954.9 885 56.9
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 7.9e-275 950.7 881 56.1
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.7e-272 941.8 882 56.9
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 5.9e-270 934.5 876 55.0
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.9e-268 929.5 881 57.0
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.6e-267 926.4 884 55.9
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 4.7e-267 924.9 807 58.2
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.8e-266 922.9 880 55.6
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 6.7e-266 921.0 880 55.2
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 4.4e-265 918.3 864 56.0
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 2.4e-263 912.5 881 55.6
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 5.3e-263 911.4 726 64.2
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 7.7e-262 907.5 873 55.4
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 8.8e-258 894.0 874 53.5
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 2.2e-256 889.4 863 56.5
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.2e-254 883.6 887 53.3
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 6.5e-253 877.9 888 54.1
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 8.0e-251 870.9 883 52.5
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.0e-247 857.8 878 50.9
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 7.7e-246 854.4 878 51.1
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.0e-245 854.0 880 53.1
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.2e-243 847.0 694 61.8
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 8.0e-243 844.3 881 52.4
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.6e-241 839.3 833 53.9
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.3e-240 837.0 881 52.7
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 3.1e-239 832.4 881 50.9
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 3.1e-239 832.4 883 51.2
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 2.5e-236 822.8 947 49.0
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 8.9e-234 814.3 899 50.1
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 2.0e-233 813.1 877 50.4
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 9.8e-233 810.8 905 50.2
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 1.1e-231 807.4 653 64.2
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.8e-231 806.6 890 49.4
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 2.0e-230 803.1 878 49.2
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.0e-229 800.8 728 57.7
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 2.5e-228 796.2 883 48.7
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 2.5e-228 796.2 883 48.8
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 9.5e-228 794.3 694 58.6
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 2.8e-227 792.7 882 48.6
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 6.2e-227 791.6 883 49.5
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 1.0e-226 790.8 882 48.8
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.8e-226 790.0 890 49.4
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 9.8e-225 784.3 882 48.4
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.7e-224 782.3 886 48.5
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 5.4e-223 778.5 828 51.9
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 2.7e-222 776.2 896 49.4
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.0e-221 772.7 877 49.0
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 6.2e-219 765.0 664 58.7
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 9.8e-217 757.7 870 48.6
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 6.4e-216 755.0 705 57.0
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.4e-215 753.8 852 48.6
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.1e-215 751.5 878 48.3
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 5.2e-210 735.3 837 49.5
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.6e-209 733.0 879 48.2
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.4e-207 727.2 798 49.0
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 7.1e-207 724.9 631 59.1
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 1.6e-206 723.8 700 55.3
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 2.1e-206 723.4 927 46.8
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.2e-199 699.1 884 45.8
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 2.1e-198 696.8 870 46.7
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 2.4e-178 630.2 550 58.4
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.8e-177 625.5 706 50.7
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 2.1e-171 607.1 696 47.3
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.4e-170 604.4 881 41.2
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 7.7e-161 572.0 642 48.6
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 6.1e-158 562.4 783 42.3
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 3.3e-156 556.6 733 43.8
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.3e-152 544.7 906 40.0
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 9.4e-143 511.9 879 37.3
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.2e-139 500.7 538 48.0
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.4e-122 444.9 634 40.2
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 5.9e-121 439.5 756 38.9
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 4.9e-115 419.9 563 41.6
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.0e-112 412.1 809 34.5
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.1e-111 408.7 263 78.7
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 6.6e-96 356.3 942 30.6
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 8.6e-96 355.9 242 75.2
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.2e-94 352.1 821 31.7
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.2e-94 352.1 821 31.7
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.1e-93 349.0 296 64.5
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 4.0e-93 347.1 583 38.4
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.1e-87 328.9 734 30.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 5.6e-87 326.6 241 68.9
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 8.1e-86 322.8 520 38.3
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 2.8e-78 297.7 192 78.1
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 2.7e-73 281.2 193 74.1
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 3.5e-73 280.8 191 73.8
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 6.7e-72 276.6 201 67.2
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 7.4e-71 273.1 350 42.0
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 9.6e-71 272.7 310 48.7
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 9.6e-71 272.7 188 70.7
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 5.5e-66 256.9 751 28.8
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.4e-63 246.5 201 60.7
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.6e-62 245.4 202 58.9
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.2e-57 229.2 260 50.4
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 3.2e-50 204.5 138 76.1
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.0e-48 199.5 338 37.6
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 7.4e-47 193.4 182 53.3
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.7e-43 182.2 216 49.1
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 2.7e-41 174.9 108 76.9
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 7.9e-41 173.3 144 63.9
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.3e-40 171.8 246 43.1
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.5e-36 159.1 162 51.2
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.2e-34 151.4 233 43.3
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.2e-33 149.4 178 44.4
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 3.6e-33 147.9 441 28.3
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 4.8e-30 137.5 218 40.4
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 4.1e-29 134.4 84 82.1
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.2e-27 128.6 374 27.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 3.2e-26 124.8 97 75.3
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.2e-25 122.9 95 65.3
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 2.7e-25 121.7 95 65.3
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 8.3e-22 110.2 100 58.0
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 9.1e-21 106.7 109 47.7
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 2.7e-20 105.1 174 39.1
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.1e-17 95.5 182 33.0
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 6.1e-17 94.0 186 32.3
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 1.8e-16 92.4 127 42.5
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 2.5e-10 72.0 50 70.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 6.1e-09 67.4 72 48.6
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 8.0e-09 67.0 88 37.5
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.2e-07 63.2 68 52.9
BcaC07g36816 Brassica carinata HOM05D004248 ORTHO05D004978 4.9e-06 57.8 49 59.2


User provided reference genes

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