Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 1.2e-262 909.4 513 100.0
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 5.7e-188 661.4 455 76.5
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.2e-177 627.1 454 72.2
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 6.2e-166 588.2 457 66.7
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 2.0e-164 583.2 454 66.7
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 2.0e-164 583.2 455 66.4
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 2.4e-162 576.2 457 67.4
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 2.4e-162 576.2 453 67.1
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 3.0e-160 569.3 455 65.9
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 6.2e-158 561.6 454 67.0
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.1e-157 560.8 454 66.5
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 3.1e-157 559.3 454 64.1
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 8.9e-157 557.8 454 65.6
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 8.9e-157 557.8 454 64.8
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.2e-156 557.4 459 65.6
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.0e-156 556.6 454 65.9
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 2.6e-156 556.2 453 64.9
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 3.4e-156 555.8 454 65.9
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 4.4e-156 555.4 454 65.9
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.4e-156 555.4 454 65.6
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 6.4e-155 551.6 453 64.5
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 3.2e-154 549.3 458 63.8
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 3.5e-153 545.8 453 63.8
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 5.1e-152 542.0 454 65.2
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.9e-151 540.0 476 64.9
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.5e-151 539.7 428 67.1
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 2.1e-150 536.6 455 63.7
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 5.2e-149 531.9 455 63.5
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 4.4e-148 528.9 504 57.5
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 2.9e-147 526.2 461 61.0
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 8.4e-147 524.6 455 61.5
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 8.4e-147 524.6 455 63.1
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 8.4e-147 524.6 455 62.2
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 2.1e-145 520.0 456 61.2
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 2.5e-143 513.1 455 60.9
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 1.6e-142 510.4 454 61.2
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 2.1e-142 510.0 455 60.2
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 3.6e-142 509.2 455 60.4
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 1.4e-141 507.3 455 61.5
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 1.4e-141 507.3 455 60.7
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.4e-141 507.3 455 60.2
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 9.0e-141 504.6 457 60.6
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.5e-140 503.8 455 60.2
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 2.2e-139 500.0 453 60.7
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.2e-139 500.0 454 60.4
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 3.5e-137 492.7 394 66.8
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 5.1e-136 488.8 398 65.8
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 2.5e-135 486.5 455 58.7
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 5.6e-135 485.3 455 57.6
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 4.8e-134 482.3 457 58.0
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.8e-133 480.3 461 57.3
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 4.0e-133 479.2 455 58.0
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 6.9e-133 478.4 459 57.5
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 4.5e-132 475.7 455 57.8
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 7.6e-132 474.9 455 57.6
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.7e-131 473.8 461 56.8
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 6.4e-131 471.9 457 58.9
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.9e-130 470.3 459 57.7
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.2e-129 467.6 390 63.8
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 1.6e-129 467.2 462 57.1
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 2.1e-129 466.8 455 56.7
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 6.0e-129 465.3 455 55.8
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 8.7e-128 461.5 453 56.1
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 1.1e-127 461.1 453 56.1
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 1.5e-127 460.7 455 56.3
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.9e-127 460.3 453 56.1
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 3.3e-127 459.5 453 55.8
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 9.6e-127 458.0 403 62.5
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 9.6e-127 458.0 457 55.4
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.3e-126 457.6 397 61.2
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.2e-126 455.3 380 64.7
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.4e-125 454.1 457 55.6
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 9.0e-125 451.4 471 55.0
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 2.6e-124 449.9 490 52.9
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 3.8e-123 446.0 483 53.4
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 8.4e-123 444.9 460 55.0
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.1e-122 444.5 418 58.1
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.9e-122 443.7 464 52.6
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 2.5e-122 443.4 457 54.7
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.2e-122 443.0 443 54.0
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 7.1e-122 441.8 457 54.5
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 9.3e-122 441.4 457 54.5
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 9.3e-122 441.4 406 59.9
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 3.9e-120 436.0 452 54.4
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 3.3e-119 433.0 460 54.1
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 9.6e-119 431.4 473 51.4
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 2.4e-117 426.8 403 59.8
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 4.5e-116 422.5 395 58.7
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 5.9e-116 422.2 461 54.0
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.2e-115 420.2 461 52.5
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.7e-113 413.3 448 53.3
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 3.5e-113 412.9 462 52.2
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.1e-113 412.1 425 56.5
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.3e-112 411.0 465 50.3
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 1.9e-111 407.1 381 59.6
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 5.3e-109 399.1 458 52.2
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.3e-107 394.4 456 50.2
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.3e-107 394.4 461 50.3
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.9e-107 393.3 380 57.1
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.2e-106 389.8 337 63.2
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.9e-104 382.9 337 62.9
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.5e-103 380.9 358 59.8
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 6.9e-101 372.1 392 54.8
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 4.5e-100 369.4 340 60.3
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 2.4e-93 347.1 504 46.0
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 2.5e-90 337.0 367 53.1
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 3.2e-90 336.7 391 50.4
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 5.5e-90 335.9 400 49.8
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.2e-82 308.9 431 47.1
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 6.8e-80 302.4 215 72.1
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 6.8e-64 249.2 267 52.4
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 1.2e-55 221.9 123 88.6
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 2.0e-52 211.1 476 33.4
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 4.6e-52 209.9 122 86.1
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 7.8e-52 209.1 386 38.9
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 2.3e-51 207.6 475 32.0
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 2.0e-47 194.5 114 82.5
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 3.1e-40 170.6 466 27.3
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.5e-31 141.7 104 73.1
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 3.2e-29 134.0 86 76.7
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 9.6e-26 122.5 104 62.5
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.8e-25 120.9 68 86.8
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 4.5e-23 113.6 76 75.0
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 8.4e-22 109.4 56 91.1
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.4e-21 107.8 113 43.4
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 2.8e-17 94.4 157 40.1
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 3.1e-08 64.3 91 40.7
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 9.0e-08 62.8 380 23.4
Gohir.A11G262000 Gossypium hirsutum HOM05D005892 ORTHO05D007364 4.5e-07 60.5 47 59.6


User provided reference genes

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