Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p036333 Quercus lobata HOM05D006079 ORTHO05D008156 1.1e-248 862.8 432 100.0
Haze_20934 Corylus avellana HOM05D006079 ORTHO05D008156 2.6e-210 735.3 438 84.5
Cfa017268 Carpinus fangiana HOM05D006079 ORTHO05D008156 5.9e-210 734.2 434 85.3
CiPaw.10G153700 Carya illinoinensis HOM05D006079 ORTHO05D008156 2.7e-207 725.3 433 82.9
Manes.08G086700 Manihot esculenta HOM05D006079 ORTHO05D008156 4.8e-204 714.5 432 80.6
GSVIVG01034026001 Vitis vinifera HOM05D006079 ORTHO05D008156 1.4e-198 696.4 432 79.9
Prupe.6G269000 Prunus persica HOM05D006079 ORTHO05D008156 3.0e-198 695.3 432 81.9
Dinv35521 Davidia involucrata HOM05D006079 ORTHO05D008156 5.1e-198 694.5 435 80.0
FAN14G2872 Fragaria x ananassa HOM05D006079 ORTHO05D008156 8.8e-198 693.7 432 80.6
FvH4_6g12250 Fragaria vesca HOM05D006079 ORTHO05D008156 1.1e-197 693.3 432 80.6
Duzib093G0682 Durio zibethinus HOM05D006079 ORTHO05D008156 2.0e-197 692.6 431 77.5
PGR031G3170 Punica granatum HOM05D006079 ORTHO05D008156 3.3e-197 691.8 436 79.6
Thecc.05G024000 Theobroma cacao HOM05D006079 ORTHO05D008156 4.4e-197 691.4 432 79.4
CSS0045639 Camellia sinensis var. sinensis HOM05D006079 ORTHO05D008156 1.3e-196 689.9 433 79.0
FAN09G0680 Fragaria x ananassa HOM05D006079 ORTHO05D008156 1.7e-196 689.5 432 80.1
Psat3g135200 Pisum sativum HOM05D006079 ORTHO05D008156 6.3e-196 687.6 435 78.9
FAN02G2404 Fragaria x ananassa HOM05D006079 ORTHO05D008156 1.1e-195 686.8 432 79.9
COL.COLO4_14632 Corchorus olitorius HOM05D006079 ORTHO05D008156 7.0e-195 684.1 432 78.7
Glyma.07G143100 Glycine max HOM05D006079 ORTHO05D008156 7.0e-195 684.1 432 79.4
CANSAT35G1087 Cannabis sativa HOM05D006079 ORTHO05D008156 9.1e-195 683.7 432 79.4
Atru.chr8.2129 Acer truncatum HOM05D006079 ORTHO05D008156 2.6e-194 682.2 435 77.2
FAN05G0163 Fragaria x ananassa HOM05D006079 ORTHO05D008156 3.5e-194 681.8 432 79.4
Gorai.012G110900 Gossypium raimondii HOM05D006079 ORTHO05D008156 3.5e-194 681.8 432 76.6
Duzib128G0993 Durio zibethinus HOM05D006079 ORTHO05D008156 1.3e-193 679.9 432 78.0
Actinidia13795 Actinidia chinensis HOM05D006079 ORTHO05D008156 2.2e-193 679.1 433 78.8
Gohir.A04G087500 Gossypium hirsutum HOM05D006079 ORTHO05D008156 2.2e-193 679.1 432 76.9
RcHm_v2.0_Chr3g0464051 Rosa chinensis HOM05D006079 ORTHO05D008156 5.0e-193 677.9 432 78.2
Eucgr.B02761 Eucalyptus grandis HOM05D006079 ORTHO05D008156 1.9e-192 676.0 432 78.5
MD12G1158600 Malus domestica HOM05D006079 ORTHO05D008156 3.2e-192 675.2 432 78.7
Lj1g0026135 Lotus japonicus HOM05D006079 ORTHO05D008156 8.0e-191 670.6 438 77.2
Cpa.g.sc56.97 Carica papaya HOM05D006079 ORTHO05D008156 1.4e-190 669.8 424 78.1
Lalb_Chr01g0022871 Lupinus albus HOM05D006079 ORTHO05D008156 2.2e-188 662.5 434 77.2
Gohir.D04G127900 Gossypium hirsutum HOM05D006079 ORTHO05D008156 6.3e-188 661.0 432 75.2
TWI77G0608 Tripterygium wilfordii HOM05D006079 ORTHO05D008156 1.4e-187 659.8 432 76.4
Sabra06G0073200 Salix brachista HOM05D006079 ORTHO05D008156 1.8e-187 659.4 434 77.2
Nn2g13580 Nelumbo nucifera HOM05D006079 ORTHO05D008156 2.4e-187 659.1 432 74.3
Ciclev10011790m.g Citrus clementina HOM05D006079 ORTHO05D008156 2.6e-186 655.6 434 77.4
Ca_09158_v3 Cicer arietinum L. HOM05D006079 ORTHO05D008156 6.5e-185 651.0 433 76.0
Potri.006G095400 Populus trichocarpa HOM05D006079 ORTHO05D008156 6.5e-185 651.0 434 75.8
Medtr7g066250 Medicago truncatula HOM05D006079 ORTHO05D008156 2.5e-184 649.0 435 76.3
Phvul.008G111400 Phaseolus vulgaris HOM05D006079 ORTHO05D008156 4.2e-184 648.3 433 75.3
Lj2A83T75 Lonicera japonica HOM05D006079 ORTHO05D008156 8.0e-183 644.0 406 79.8
arahy.Tifrunner.gnm1.ann1.3KU04F Arachis hypogaea HOM05D006079 ORTHO05D008156 1.4e-182 643.3 434 76.3
Peaxi162Scf01352g00015 Petunia axillaris HOM05D006079 ORTHO05D008156 1.8e-182 642.9 428 74.3
Nitab4.5_0007539g0010 Nicotiana tabacum HOM05D006079 ORTHO05D008156 8.8e-182 640.6 438 73.1
Solyc09g011880.3 Solanum lycopersicum HOM05D006079 ORTHO05D008156 4.4e-181 638.3 436 73.2
Sopen09g006700 Solanum pennellii HOM05D006079 ORTHO05D008156 7.5e-181 637.5 436 72.9
CsaV3_4G025930 Cucumis sativus L. HOM05D006079 ORTHO05D008156 9.7e-181 637.1 432 74.3
PGSC0003DMG400020333 Solanum tuberosum HOM05D006079 ORTHO05D008156 9.7e-181 637.1 438 72.4
MELO3C003219.2 Cucumis melo HOM05D006079 ORTHO05D008156 2.8e-180 635.6 432 74.1
PSO585G0039 Papaver somniferum HOM05D006079 ORTHO05D008156 3.7e-180 635.2 437 71.4
Sc25g0003370 Simmondsia chinensis HOM05D006079 ORTHO05D008156 1.1e-179 633.6 432 73.8
ClCG04G007320 Citrullus lanatus HOM05D006079 ORTHO05D008156 2.4e-179 632.5 432 73.8
Nitab4.5_0000008g0510 Nicotiana tabacum HOM05D006079 ORTHO05D008156 3.1e-179 632.1 438 71.7
Sed0002088 Sechium edule HOM05D006079 ORTHO05D008156 2.0e-178 629.4 432 72.5
PSO384G3626 Papaver somniferum HOM05D006079 ORTHO05D008156 1.7e-177 626.3 437 71.2
arahy.Tifrunner.gnm1.ann1.GZPT0A Arachis hypogaea HOM05D006079 ORTHO05D008156 8.5e-177 624.0 458 71.2
ECA236G0495 Erigeron canadensis HOM05D006079 ORTHO05D008156 1.8e-174 616.3 446 67.3
Cc06_g01790 Coffea canephora HOM05D006079 ORTHO05D008156 2.3e-174 615.9 437 71.6
TAR633G1690 Trochodendron aralioides HOM05D006079 ORTHO05D008156 4.8e-172 608.2 440 70.5
MSTRG.5605 Avicennia marina HOM05D006079 ORTHO05D008156 3.1e-171 605.5 435 71.3
HanXRQChr04g0124711 Helianthus annuus HOM05D006079 ORTHO05D008156 4.1e-171 605.1 434 69.4
SGA_v2.0_scaffold85G26780 Striga asiatica HOM05D006079 ORTHO05D008156 1.0e-169 600.5 435 68.5
Rhsim05G0203500 Rhododendron simsii HOM05D006079 ORTHO05D008156 2.8e-167 592.4 351 82.1
Migut.J00236 Erythranthe guttata HOM05D006079 ORTHO05D008156 1.4e-166 590.1 434 67.3
Actinidia29142 Actinidia chinensis HOM05D006079 ORTHO05D008156 2.6e-165 585.9 426 72.5
Oeu015011.1 Olea europaea HOM05D006079 ORTHO05D008156 5.7e-165 584.7 415 73.3
THA.LOC104823390 Tarenaya hassleriana HOM05D006079 ORTHO05D008156 1.3e-164 583.6 432 66.7
Aqoxy1G00752 Aquilegia oxysepala HOM05D006079 ORTHO05D008156 7.8e-162 574.3 432 67.6
CARHR132560 Cardamine hirsuta HOM05D006079 ORTHO05D008156 4.3e-160 568.5 435 63.7
Ah.11g045330 Amaranthus hybridus HOM05D006079 ORTHO05D008156 9.5e-160 567.4 438 67.6
VMungo1383G1007 Vigna mungo HOM05D006079 ORTHO05D008156 1.2e-159 567.0 389 75.3
Thhalv10016725m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 6.8e-158 561.2 433 62.8
Sp4g20320 Schrenkiella parvula HOM05D006079 ORTHO05D008156 6.8e-158 561.2 432 63.9
BcaB02g09226 Brassica carinata HOM05D006079 ORTHO05D008156 1.2e-157 560.5 433 61.9
DCAR_024040 Daucus carota HOM05D006079 ORTHO05D008156 1.5e-157 560.1 465 62.4
AUR62041356 Chenopodium quinoa HOM05D006079 ORTHO05D008156 2.0e-157 559.7 399 71.4
BcaC02g11943 Brassica carinata HOM05D006079 ORTHO05D008156 7.5e-157 557.8 433 61.9
AL4G34980 Arabidopsis lyrata HOM05D006079 ORTHO05D008156 2.9e-156 555.8 432 62.7
Aa31LG5G23170 Aethionema arabicum HOM05D006079 ORTHO05D008156 6.4e-156 554.7 433 64.0
AT2G38000 Arabidopsis thaliana HOM05D006079 ORTHO05D008156 1.1e-155 553.9 433 63.3
BolC4t22573H Brassica oleracea HOM05D006079 ORTHO05D008156 2.4e-155 552.7 419 62.5
Lsat_1_v5_gn_8_82341 Lactuca sativa HOM05D006079 ORTHO05D008156 2.4e-155 552.7 416 70.2
A05p08000 Brassica napus HOM05D006079 ORTHO05D008156 6.0e-154 548.1 433 61.7
vmacro20226 Vaccinium macrocarpon HOM05D006079 ORTHO05D008156 6.0e-154 548.1 441 65.8
Carub.0004s1997 Capsella rubella HOM05D006079 ORTHO05D008156 5.0e-153 545.0 432 61.8
MBI05_g36624_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 2.5e-152 542.7 328 79.6
BraA05t19766Z Brassica rapa HOM05D006079 ORTHO05D008156 4.3e-152 542.0 414 62.6
EL10Ac5g11535 Beta vulgaris HOM05D006079 ORTHO05D008156 5.6e-152 541.6 431 63.6
BcaB02g09227 Brassica carinata HOM05D006079 ORTHO05D008156 1.8e-150 536.6 433 60.0
Hma1.2p1_0763F.1_g214490 Hydrangea macrophylla HOM05D006079 ORTHO05D008156 1.5e-149 533.5 428 67.8
Gohir.A13G086740 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.9e-147 526.6 431 63.6
ATR0618G129 Amborella trichopoda HOM05D006079 ORTHO05D008156 4.1e-147 525.4 418 65.1
CDE04G0224 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 1.5e-144 516.9 420 63.1
HPP92_006654 Vanilla planifolia HOM05D006079 ORTHO05D008156 1.4e-142 510.4 433 58.9
C04p09660 Brassica napus HOM05D006079 ORTHO05D008156 9.9e-141 504.2 399 61.4
Os05g0316200 Oryza sativa ssp. japonica HOM05D006079 ORTHO05D008156 8.3e-140 501.1 407 63.6
unitig_26.g9105 Utricularia gibba HOM05D006079 ORTHO05D008156 3.0e-137 492.7 423 58.9
Zm00001eb169630 Zea mays HOM05D006079 ORTHO05D008156 3.0e-137 492.7 405 62.0
SEGI_08405 Sequoiadendron giganteum HOM05D006079 ORTHO05D008156 8.7e-129 464.5 329 70.5
TPR.G29287 Trifolium pratense HOM05D006079 ORTHO05D008156 6.9e-118 428.3 263 80.6
CDE07G0746 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 1.6e-114 417.2 432 52.8
CAN.G338.65 Capsicum annuum HOM05D006079 ORTHO05D008156 1.9e-112 410.2 309 67.6
AagrBONN_evm.TU.Sc2ySwM_117.3694 Anthoceros agrestis HOM05D006079 ORTHO05D008156 9.0e-102 374.8 405 49.9
Migut.J00237 Erythranthe guttata HOM05D006079 ORTHO05D008156 2.9e-92 343.2 399 48.9
Mapoly0040s0094 Marchantia polymorpha HOM05D006079 ORTHO05D008156 2.5e-91 340.1 435 45.1
BcaC02g11941 Brassica carinata HOM05D006079 ORTHO05D008156 1.0e-89 334.7 217 70.0
SMO172G0100 Selaginella moellendorffii HOM05D006079 ORTHO05D008156 4.8e-87 325.9 320 55.6
Pp3c16_16710 Physcomitrium patens HOM05D006079 ORTHO05D008156 1.4e-83 314.3 433 43.4
Gohir.D13G085200 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.1e-80 304.7 214 68.7
HPP92_006629 Vanilla planifolia HOM05D006079 ORTHO05D008156 8.2e-79 298.5 309 50.5
MD04G1144700 Malus domestica HOM05D006079 ORTHO05D008156 1.2e-61 241.5 160 75.0
Gohir.A01G178136 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.1e-59 235.0 168 66.1
Lsat_1_v5_gn_5_162881 Lactuca sativa HOM05D006079 ORTHO05D008156 3.6e-58 229.9 135 76.3
CAN.G686.13 Capsicum annuum HOM05D006079 ORTHO05D008156 5.2e-57 226.1 134 79.9
QL07p036284 Quercus lobata HOM05D006079 ORTHO05D338014 8.6e-52 208.8 99 96.0
Thhalv10017300m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 5.2e-49 199.5 223 47.5
Gorai.006G157700 Gossypium raimondii HOM05D006079 ORTHO05D008156 2.4e-46 190.7 125 73.6
Gohir.D09G137350 Gossypium hirsutum HOM05D006079 ORTHO05D008156 5.9e-45 186.0 125 72.0
TAR636G2503 Trochodendron aralioides HOM05D006079 ORTHO05D008156 3.7e-31 140.2 82 85.4
Cc02_g12960 Coffea canephora HOM05D006079 ORTHO05D008156 1.9e-30 137.9 134 56.7
TPR.G34865 Trifolium pratense HOM05D006079 ORTHO05D008156 3.0e-28 130.6 122 58.2
MD04G1144600 Malus domestica HOM05D006079 ORTHO05D032748 1.1e-25 122.1 92 71.7
MBI05_g36625_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 2.2e-23 114.4 101 60.4
BraA05t21464Z Brassica rapa HOM05D006079 ORTHO05D032748 1.9e-14 84.7 52 65.4
QL05p054729 Quercus lobata HOM05D006079 ORTHO05D338210 5.6e-11 73.2 53 69.8
BcaC04g24204 Brassica carinata HOM05D006079 ORTHO05D032748 2.1e-10 71.2 52 57.7


User provided reference genes

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