Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p036284 Quercus lobata HOM05D006079 ORTHO05D338014 1.8e-238 828.9 438 100.0
QL07p036316 Quercus lobata HOM05D006079 ORTHO05D337699 2.6e-117 426.4 283 84.1
QL07p036333 Quercus lobata HOM05D006079 ORTHO05D008156 8.7e-52 208.8 99 96.0
Glyma.07G143100 Glycine max HOM05D006079 ORTHO05D008156 1.9e-43 181.0 98 83.7
PGR031G3170 Punica granatum HOM05D006079 ORTHO05D008156 3.3e-43 180.3 134 63.4
Psat3g135200 Pisum sativum HOM05D006079 ORTHO05D008156 7.4e-43 179.1 99 81.8
Cfa017268 Carpinus fangiana HOM05D006079 ORTHO05D008156 9.6e-43 178.7 98 83.7
Haze_20934 Corylus avellana HOM05D006079 ORTHO05D008156 9.6e-43 178.7 98 83.7
CANSAT35G1087 Cannabis sativa HOM05D006079 ORTHO05D008156 1.3e-42 178.3 123 68.3
Manes.08G086700 Manihot esculenta HOM05D006079 ORTHO05D008156 1.3e-42 178.3 106 79.2
VMungo1383G1007 Vigna mungo HOM05D006079 ORTHO05D008156 2.1e-42 177.6 98 82.7
Rhsim05G0203500 Rhododendron simsii HOM05D006079 ORTHO05D008156 2.8e-42 177.2 101 80.2
CSS0045639 Camellia sinensis var. sinensis HOM05D006079 ORTHO05D008156 1.8e-41 174.5 98 78.6
arahy.Tifrunner.gnm1.ann1.3KU04F Arachis hypogaea HOM05D006079 ORTHO05D008156 2.4e-41 174.1 111 73.9
Medtr7g066250 Medicago truncatula HOM05D006079 ORTHO05D008156 3.1e-41 173.7 100 79.0
Hma1.2p1_0763F.1_g214490 Hydrangea macrophylla HOM05D006079 ORTHO05D008156 4.0e-41 173.3 133 66.2
Lj1g0026135 Lotus japonicus HOM05D006079 ORTHO05D008156 9.0e-41 172.2 99 77.8
Phvul.008G111400 Phaseolus vulgaris HOM05D006079 ORTHO05D008156 9.0e-41 172.2 98 79.6
Lalb_Chr01g0022871 Lupinus albus HOM05D006079 ORTHO05D008156 1.5e-40 171.4 99 79.8
arahy.Tifrunner.gnm1.ann1.GZPT0A Arachis hypogaea HOM05D006079 ORTHO05D008156 2.0e-40 171.0 100 78.0
Actinidia13795 Actinidia chinensis HOM05D006079 ORTHO05D008156 5.8e-40 169.5 98 79.6
Cpa.g.sc56.97 Carica papaya HOM05D006079 ORTHO05D008156 5.8e-40 169.5 98 77.6
CiPaw.10G153700 Carya illinoinensis HOM05D006079 ORTHO05D008156 1.0e-39 168.7 98 77.6
Potri.006G095400 Populus trichocarpa HOM05D006079 ORTHO05D008156 1.0e-39 168.7 107 74.8
GSVIVG01034026001 Vitis vinifera HOM05D006079 ORTHO05D008156 1.0e-39 168.7 97 80.4
Eucgr.B02761 Eucalyptus grandis HOM05D006079 ORTHO05D008156 1.7e-39 167.9 106 73.6
Prupe.6G269000 Prunus persica HOM05D006079 ORTHO05D008156 1.7e-39 167.9 98 79.6
Actinidia29142 Actinidia chinensis HOM05D006079 ORTHO05D008156 2.9e-39 167.2 98 78.6
Ca_09158_v3 Cicer arietinum L. HOM05D006079 ORTHO05D008156 3.8e-39 166.8 108 73.1
FAN09G0680 Fragaria x ananassa HOM05D006079 ORTHO05D008156 3.8e-39 166.8 112 69.6
RcHm_v2.0_Chr3g0464051 Rosa chinensis HOM05D006079 ORTHO05D008156 3.8e-39 166.8 106 72.6
Atru.chr8.2129 Acer truncatum HOM05D006079 ORTHO05D008156 6.5e-39 166.0 113 71.7
FvH4_6g12250 Fragaria vesca HOM05D006079 ORTHO05D008156 8.4e-39 165.6 98 76.5
FAN02G2404 Fragaria x ananassa HOM05D006079 ORTHO05D008156 8.4e-39 165.6 98 76.5
FAN05G0163 Fragaria x ananassa HOM05D006079 ORTHO05D008156 8.4e-39 165.6 98 76.5
FAN14G2872 Fragaria x ananassa HOM05D006079 ORTHO05D008156 8.4e-39 165.6 98 76.5
TWI77G0608 Tripterygium wilfordii HOM05D006079 ORTHO05D008156 1.4e-38 164.9 98 77.6
Ciclev10011790m.g Citrus clementina HOM05D006079 ORTHO05D008156 2.5e-38 164.1 108 74.1
Duzib128G0993 Durio zibethinus HOM05D006079 ORTHO05D008156 3.2e-38 163.7 106 70.8
Gohir.A13G086740 Gossypium hirsutum HOM05D006079 ORTHO05D008156 3.2e-38 163.7 112 68.8
Lsat_1_v5_gn_8_82341 Lactuca sativa HOM05D006079 ORTHO05D008156 3.2e-38 163.7 112 71.4
Gohir.D04G127900 Gossypium hirsutum HOM05D006079 ORTHO05D008156 4.2e-38 163.3 133 60.9
Gorai.012G110900 Gossypium raimondii HOM05D006079 ORTHO05D008156 4.2e-38 163.3 133 60.9
ECA236G0495 Erigeron canadensis HOM05D006079 ORTHO05D008156 5.5e-38 162.9 109 70.6
Duzib093G0682 Durio zibethinus HOM05D006079 ORTHO05D008156 7.1e-38 162.5 98 73.5
MD12G1158600 Malus domestica HOM05D006079 ORTHO05D008156 9.3e-38 162.2 98 76.5
PGSC0003DMG400020333 Solanum tuberosum HOM05D006079 ORTHO05D008156 9.3e-38 162.2 106 67.9
COL.COLO4_14632 Corchorus olitorius HOM05D006079 ORTHO05D008156 1.6e-37 161.4 98 75.5
Gohir.D13G085200 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.6e-37 161.4 104 71.2
Solyc09g011880.3 Solanum lycopersicum HOM05D006079 ORTHO05D008156 2.1e-37 161.0 106 67.9
CsaV3_4G025930 Cucumis sativus L. HOM05D006079 ORTHO05D008156 2.7e-37 160.6 98 75.5
HanXRQChr04g0124711 Helianthus annuus HOM05D006079 ORTHO05D008156 2.7e-37 160.6 109 68.8
Sopen09g006700 Solanum pennellii HOM05D006079 ORTHO05D008156 2.7e-37 160.6 106 67.9
Gohir.A04G087500 Gossypium hirsutum HOM05D006079 ORTHO05D008156 4.6e-37 159.8 126 62.7
Sabra06G0073200 Salix brachista HOM05D006079 ORTHO05D008156 4.6e-37 159.8 107 72.0
MELO3C003219.2 Cucumis melo HOM05D006079 ORTHO05D008156 6.0e-37 159.5 98 74.5
Thecc.05G024000 Theobroma cacao HOM05D006079 ORTHO05D008156 7.9e-37 159.1 98 71.4
Dinv35521 Davidia involucrata HOM05D006079 ORTHO05D008156 1.0e-36 158.7 101 73.3
ClCG04G007320 Citrullus lanatus HOM05D006079 ORTHO05D008156 3.0e-36 157.1 98 73.5
Peaxi162Scf01352g00015 Petunia axillaris HOM05D006079 ORTHO05D008156 3.0e-36 157.1 99 72.7
CAN.G338.65 Capsicum annuum HOM05D006079 ORTHO05D008156 3.9e-36 156.8 106 66.0
Nitab4.5_0007539g0010 Nicotiana tabacum HOM05D006079 ORTHO05D008156 3.9e-36 156.8 109 67.9
Sed0002088 Sechium edule HOM05D006079 ORTHO05D008156 3.9e-36 156.8 97 74.2
vmacro20226 Vaccinium macrocarpon HOM05D006079 ORTHO05D008156 5.1e-36 156.4 98 73.5
Lj2A83T75 Lonicera japonica HOM05D006079 ORTHO05D008156 3.3e-35 153.7 97 75.3
PSO384G3626 Papaver somniferum HOM05D006079 ORTHO05D008156 3.3e-35 153.7 103 72.8
PSO585G0039 Papaver somniferum HOM05D006079 ORTHO05D008156 3.3e-35 153.7 103 72.8
Nitab4.5_0000008g0510 Nicotiana tabacum HOM05D006079 ORTHO05D008156 5.7e-35 152.9 109 66.1
Oeu015011.1 Olea europaea HOM05D006079 ORTHO05D008156 5.7e-35 152.9 89 76.4
Cc06_g01790 Coffea canephora HOM05D006079 ORTHO05D008156 1.3e-34 151.8 106 67.9
Nn2g13580 Nelumbo nucifera HOM05D006079 ORTHO05D008156 2.1e-34 151.0 104 68.3
Ah.11g045330 Amaranthus hybridus HOM05D006079 ORTHO05D008156 4.8e-34 149.8 105 66.7
Sc25g0003370 Simmondsia chinensis HOM05D006079 ORTHO05D008156 8.2e-34 149.1 98 69.4
Aqoxy1G00752 Aquilegia oxysepala HOM05D006079 ORTHO05D008156 1.8e-33 147.9 107 67.3
AUR62041356 Chenopodium quinoa HOM05D006079 ORTHO05D008156 1.5e-32 144.8 106 66.0
MBI05_g36624_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 2.6e-32 144.1 75 84.0
TAR633G1690 Trochodendron aralioides HOM05D006079 ORTHO05D008156 2.6e-32 144.1 81 80.2
THA.LOC104823390 Tarenaya hassleriana HOM05D006079 ORTHO05D008156 5.8e-32 142.9 112 60.7
Sp4g20320 Schrenkiella parvula HOM05D006079 ORTHO05D008156 7.6e-32 142.5 94 67.0
Migut.J00236 Erythranthe guttata HOM05D006079 ORTHO05D008156 1.3e-31 141.7 94 66.0
Carub.0004s1997 Capsella rubella HOM05D006079 ORTHO05D008156 1.7e-31 141.4 111 61.3
AL4G34980 Arabidopsis lyrata HOM05D006079 ORTHO05D008156 2.2e-31 141.0 96 64.6
BcaB02g09226 Brassica carinata HOM05D006079 ORTHO05D008156 3.8e-31 140.2 96 64.6
BcaB02g09227 Brassica carinata HOM05D006079 ORTHO05D008156 3.8e-31 140.2 96 64.6
CARHR132560 Cardamine hirsuta HOM05D006079 ORTHO05D008156 6.5e-31 139.4 83 72.3
Thhalv10016725m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 8.4e-31 139.0 111 60.4
AT2G38000 Arabidopsis thaliana HOM05D006079 ORTHO05D008156 1.1e-30 138.7 84 71.4
BolC4t22573H Brassica oleracea HOM05D006079 ORTHO05D008156 1.1e-30 138.7 96 63.5
Os05g0316200 Oryza sativa ssp. japonica HOM05D006079 ORTHO05D008156 1.1e-30 138.7 98 67.3
MSTRG.5605 Avicennia marina HOM05D006079 ORTHO05D008156 1.4e-30 138.3 107 61.7
EL10Ac5g11535 Beta vulgaris HOM05D006079 ORTHO05D008156 1.4e-30 138.3 106 63.2
BcaC02g11943 Brassica carinata HOM05D006079 ORTHO05D008156 1.4e-30 138.3 96 63.5
C04p09660 Brassica napus HOM05D006079 ORTHO05D008156 1.4e-30 138.3 96 63.5
SGA_v2.0_scaffold85G26780 Striga asiatica HOM05D006079 ORTHO05D008156 1.9e-30 137.9 90 68.9
Lsat_1_v5_gn_5_162881 Lactuca sativa HOM05D006079 ORTHO05D008156 3.2e-30 137.1 88 72.7
SEGI_08405 Sequoiadendron giganteum HOM05D006079 ORTHO05D008156 5.5e-30 136.3 83 72.3
Gohir.A01G178136 Gossypium hirsutum HOM05D006079 ORTHO05D008156 7.2e-30 136.0 104 61.5
Zm00001eb169630 Zea mays HOM05D006079 ORTHO05D008156 7.2e-30 136.0 112 58.9
Aa31LG5G23170 Aethionema arabicum HOM05D006079 ORTHO05D008156 1.6e-29 134.8 90 66.7
ATR0618G129 Amborella trichopoda HOM05D006079 ORTHO05D008156 7.9e-29 132.5 99 62.6
A05p08000 Brassica napus HOM05D006079 ORTHO05D008156 1.0e-28 132.1 94 60.6
MD04G1144700 Malus domestica HOM05D006079 ORTHO05D008156 5.1e-28 129.8 79 75.9
DCAR_024040 Daucus carota HOM05D006079 ORTHO05D008156 8.7e-28 129.0 131 52.7
BraA05t19766Z Brassica rapa HOM05D006079 ORTHO05D008156 4.3e-27 126.7 83 65.1
unitig_26.g9105 Utricularia gibba HOM05D006079 ORTHO05D008156 1.3e-26 125.2 88 64.8
CDE04G0224 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 2.2e-26 124.4 76 72.4
CDE07G0746 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 3.7e-26 123.6 77 71.4
HPP92_006654 Vanilla planifolia HOM05D006079 ORTHO05D008156 4.1e-25 120.2 80 66.2
Migut.J00237 Erythranthe guttata HOM05D006079 ORTHO05D008156 1.0e-23 115.5 84 61.9
AagrBONN_evm.TU.Sc2ySwM_117.3694 Anthoceros agrestis HOM05D006079 ORTHO05D008156 8.5e-23 112.5 82 56.1
HPP92_006629 Vanilla planifolia HOM05D006079 ORTHO05D008156 8.5e-23 112.5 80 65.0
SMO172G0100 Selaginella moellendorffii HOM05D006079 ORTHO05D008156 7.9e-21 105.9 78 61.5
Gorai.006G157700 Gossypium raimondii HOM05D006079 ORTHO05D008156 3.9e-20 103.6 70 68.6
Gohir.D09G137350 Gossypium hirsutum HOM05D006079 ORTHO05D008156 2.5e-19 100.9 70 67.1
Mapoly0040s0094 Marchantia polymorpha HOM05D006079 ORTHO05D008156 1.7e-15 88.2 75 53.3
Pp3c16_16710 Physcomitrium patens HOM05D006079 ORTHO05D008156 2.1e-13 81.3 76 48.7
TPR.G34865 Trifolium pratense HOM05D006079 ORTHO05D008156 4.5e-08 63.5 63 54.0


User provided reference genes

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