Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p036025 Quercus lobata HOM05D003378 ORTHO05D003942 4.5e-62 241.1 126 100.0
Haze_20961 Corylus avellana HOM05D003378 ORTHO05D003942 1.3e-21 106.7 127 56.7
Cfa017247 Carpinus fangiana HOM05D003378 ORTHO05D003942 2.3e-21 105.9 130 56.9
Ciclev10011473m.g Citrus clementina HOM05D003378 ORTHO05D003942 3.4e-17 92.0 133 52.6
Potri.006G097600 Populus trichocarpa HOM05D003378 ORTHO05D003942 4.4e-17 91.7 132 52.3
Atru.chr8.2207 Acer truncatum HOM05D003378 ORTHO05D003942 5.8e-17 91.3 129 52.7
Prupe.6G271800 Prunus persica HOM05D003378 ORTHO05D003942 1.4e-15 86.7 130 45.4
Sabra06G0075100 Salix brachista HOM05D003378 ORTHO05D003942 1.4e-15 86.7 132 50.8
Duzib128G1405 Durio zibethinus HOM05D003378 ORTHO05D003942 9.3e-15 84.0 126 51.6
Duzib093G0826 Durio zibethinus HOM05D003378 ORTHO05D003942 1.0e-13 80.5 127 50.4
CiPaw.10G154700 Carya illinoinensis HOM05D003378 ORTHO05D003942 2.3e-13 79.3 126 50.8
FAN02G2254 Fragaria x ananassa HOM05D003378 ORTHO05D003942 8.7e-13 77.4 125 49.6
THA.LOC104823284 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 8.7e-13 77.4 145 46.2
FAN05G4401 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.5e-12 75.9 125 48.8
FAN09G0987 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.5e-12 75.9 124 49.2
Thhalv10013276m.g Eutrema salsugineum HOM05D003378 ORTHO05D003942 3.3e-12 75.5 136 47.8
ClCG10G021890 Citrullus lanatus HOM05D003378 ORTHO05D003942 5.6e-12 74.7 133 49.6
Glyma.01G113000 Glycine max HOM05D003378 ORTHO05D003942 9.6e-12 73.9 134 48.5
Actinidia29123 Actinidia chinensis HOM05D003378 ORTHO05D003942 1.3e-11 73.6 125 45.6
MD12G1161400 Malus domestica HOM05D003378 ORTHO05D003942 1.3e-11 73.6 126 49.2
MD04G1148000 Malus domestica HOM05D003378 ORTHO05D003942 1.6e-11 73.2 129 48.1
Nitab4.5_0004030g0030 Nicotiana tabacum HOM05D003378 ORTHO05D003942 1.6e-11 73.2 94 54.3
vmacro22553 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 1.6e-11 73.2 125 46.4
Thecc.05G020500 Theobroma cacao HOM05D003378 ORTHO05D003942 2.1e-11 72.8 130 49.2
Glyma.18G197600 Glycine max HOM05D003378 ORTHO05D003942 2.8e-11 72.4 130 44.6
MELO3C009186.2 Cucumis melo HOM05D003378 ORTHO05D003942 3.6e-11 72.0 133 45.9
FvH4_6g11930 Fragaria vesca HOM05D003378 ORTHO05D003942 4.8e-11 71.6 123 48.8
FAN14G4021 Fragaria x ananassa HOM05D003378 ORTHO05D003942 4.8e-11 71.6 123 48.8
FAN14G4776 Fragaria x ananassa HOM05D003378 ORTHO05D003942 4.8e-11 71.6 123 48.8
CANSAT35G1853 Cannabis sativa HOM05D003378 ORTHO05D003942 8.1e-11 70.9 127 46.5
Lalb_Chr03g0043071 Lupinus albus HOM05D003378 ORTHO05D003942 8.1e-11 70.9 125 44.8
CsaV3_3G034100 Cucumis sativus L. HOM05D003378 ORTHO05D003942 1.4e-10 70.1 133 45.9
Gohir.D01G215500 Gossypium hirsutum HOM05D003378 ORTHO05D003942 2.4e-10 69.3 129 41.1
Gorai.002G261700 Gossypium raimondii HOM05D003378 ORTHO05D003942 2.4e-10 69.3 129 41.1
Carub.0006s0067 Capsella rubella HOM05D003378 ORTHO05D003942 3.1e-10 68.9 131 42.7
RcHm_v2.0_Chr3g0463701 Rosa chinensis HOM05D003378 ORTHO05D003942 4.0e-10 68.6 132 42.4
AT5G01220 Arabidopsis thaliana HOM05D003378 ORTHO05D003942 9.0e-10 67.4 128 42.2
arahy.Tifrunner.gnm1.ann1.YIK7D0 Arachis hypogaea HOM05D003378 ORTHO05D003942 9.0e-10 67.4 142 43.0
Actinidia13774 Actinidia chinensis HOM05D003378 ORTHO05D003942 1.2e-09 67.0 124 41.1
Nitab4.5_0000008g0880 Nicotiana tabacum HOM05D003378 ORTHO05D003942 1.2e-09 67.0 106 49.1
TWI77G0412 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 1.5e-09 66.6 128 43.8
VMungo0331G1068 Vigna mungo HOM05D003378 ORTHO05D003942 1.5e-09 66.6 129 43.4
Rhsim05G0206900 Rhododendron simsii HOM05D003378 ORTHO05D003942 2.6e-09 65.9 125 45.6
Sp6g40570 Schrenkiella parvula HOM05D003378 ORTHO05D003942 2.6e-09 65.9 137 41.6
Aa31LG1G22850 Aethionema arabicum HOM05D003378 ORTHO05D003942 3.4e-09 65.5 128 43.0
C03p00550 Brassica napus HOM05D003378 ORTHO05D003942 7.6e-09 64.3 63 57.1
Psat7g247920 Pisum sativum HOM05D003378 ORTHO05D003942 7.6e-09 64.3 124 41.1
arahy.Tifrunner.gnm1.ann1.EK5UG7 Arachis hypogaea HOM05D003378 ORTHO05D003942 1.3e-08 63.5 126 43.7
arahy.Tifrunner.gnm1.ann1.FDLX2Z Arachis hypogaea HOM05D003378 ORTHO05D003942 1.3e-08 63.5 126 43.7
arahy.Tifrunner.gnm1.ann1.L6AUEE Arachis hypogaea HOM05D003378 ORTHO05D003942 1.3e-08 63.5 142 41.5
Oeu015017.1 Olea europaea HOM05D003378 ORTHO05D003942 1.7e-08 63.2 131 45.8
Nn2g11403 Nelumbo nucifera HOM05D003378 ORTHO05D003942 2.2e-08 62.8 125 41.6
CSS0046394 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 3.8e-08 62.0 130 40.8
Aqoxy2G00958 Aquilegia oxysepala HOM05D003378 ORTHO05D003942 4.9e-08 61.6 135 43.0
CARHR211550 Cardamine hirsuta HOM05D003378 ORTHO05D003942 6.4e-08 61.2 132 42.4
Oeu030526.1 Olea europaea HOM05D003378 ORTHO05D003942 6.4e-08 61.2 135 45.9
Phvul.010G005100 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 6.4e-08 61.2 128 39.1
CiPaw.09G207100 Carya illinoinensis HOM05D003378 ORTHO05D003942 1.1e-07 60.5 38 81.6
Hma1.2p1_0244F.1_g101280 Hydrangea macrophylla HOM05D003378 ORTHO05D003942 1.4e-07 60.1 131 42.0
SGA_v2.0_scaffold85G26755 Striga asiatica HOM05D003378 ORTHO05D003942 1.9e-07 59.7 132 39.4
BolC3t12621H Brassica oleracea HOM05D003378 ORTHO05D003942 2.4e-07 59.3 122 36.9
THA.LOC104827042 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 2.4e-07 59.3 131 38.9
Ca_07617_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 3.2e-07 58.9 119 44.5
Solyc09g014300.3 Solanum lycopersicum HOM05D003378 ORTHO05D003942 3.2e-07 58.9 125 44.8
Sopen10g034560 Solanum pennellii HOM05D003378 ORTHO05D003942 3.2e-07 58.9 127 40.2
Psat3g130760 Pisum sativum HOM05D003378 ORTHO05D003942 4.2e-07 58.5 129 39.5
COL.COLO4_14573 Corchorus olitorius HOM05D003378 ORTHO05D003942 5.5e-07 58.2 40 77.5
Nitab4.5_0004912g0010 Nicotiana tabacum HOM05D003378 ORTHO05D003942 5.5e-07 58.2 126 38.9
Lj3g0001695 Lotus japonicus HOM05D003378 ORTHO05D003942 7.1e-07 57.8 136 36.0
TAR623G1156 Trochodendron aralioides HOM05D003378 ORTHO05D003942 7.1e-07 57.8 127 38.6
Sed0002007 Sechium edule HOM05D003378 ORTHO05D003942 9.3e-07 57.4 128 42.2
BraA03t09430Z Brassica rapa HOM05D003378 ORTHO05D003942 1.2e-06 57.0 138 42.0
CSS0025489 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 1.2e-06 57.0 110 38.2
Solyc10g085100.2 Solanum lycopersicum HOM05D003378 ORTHO05D003942 1.2e-06 57.0 127 39.4
A03p00390 Brassica napus HOM05D003378 ORTHO05D003942 1.6e-06 56.6 44 65.9
Phvul.008G106900 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 1.6e-06 56.6 128 40.6
BcaC06g31967 Brassica carinata HOM05D003378 ORTHO05D003942 2.1e-06 56.2 85 45.9
Nitab4.5_0000652g0220 Nicotiana tabacum HOM05D003378 ORTHO05D003942 2.1e-06 56.2 128 41.4
CAN.G355.3 Capsicum annuum HOM05D003378 ORTHO05D003942 3.5e-06 55.5 116 36.2
Glyma.03G078300 Glycine max HOM05D003378 ORTHO05D003942 3.5e-06 55.5 121 42.1
SalBow4G2524 Salvia bowleyana HOM05D003378 ORTHO05D003942 3.5e-06 55.5 129 41.9


User provided reference genes

Program Settings