Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 8.3e-75 283.5 131 100.0
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.6e-46 189.5 133 67.7
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 3.4e-44 181.8 130 66.9
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.3e-43 179.9 126 64.3
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 3.8e-43 178.3 109 71.6
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 4.9e-43 177.9 100 77.0
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.1e-42 176.8 125 63.2
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.4e-42 175.6 126 63.5
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 4.2e-42 174.9 98 78.6
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 5.4e-42 174.5 133 63.9
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 9.3e-42 173.7 108 73.1
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.2e-41 173.3 110 70.9
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.2e-41 173.3 87 82.8
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 1.2e-41 173.3 109 72.5
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 2.1e-41 172.6 122 63.1
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 2.1e-41 172.6 104 75.0
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 2.1e-41 172.6 104 75.0
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 2.7e-41 172.2 125 60.8
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 3.5e-41 171.8 98 77.6
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 4.6e-41 171.4 87 82.8
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 4.6e-41 171.4 104 75.0
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 4.6e-41 171.4 125 64.8
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 6.0e-41 171.0 98 74.5
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 6.0e-41 171.0 103 70.9
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 6.0e-41 171.0 103 70.9
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.0e-40 170.2 102 69.6
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 1.0e-40 170.2 123 66.7
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.3e-40 169.9 87 82.8
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.3e-40 169.9 87 82.8
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.3e-40 169.9 87 82.8
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 1.7e-40 169.5 99 75.8
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.7e-40 169.5 103 69.9
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 2.3e-40 169.1 99 75.8
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 2.3e-40 169.1 132 61.4
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 2.3e-40 169.1 116 63.8
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.0e-40 168.7 87 81.6
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 3.0e-40 168.7 87 80.5
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 5.1e-40 167.9 101 73.3
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 5.1e-40 167.9 99 74.7
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 6.6e-40 167.5 99 72.7
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 8.7e-40 167.2 155 55.5
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.5e-39 166.4 87 79.3
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.5e-39 166.4 87 79.3
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.5e-39 166.4 87 79.3
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.5e-39 166.4 98 73.5
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 2.5e-39 165.6 87 79.3
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 2.5e-39 165.6 100 72.0
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 4.3e-39 164.9 96 75.0
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 5.6e-39 164.5 100 70.0
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 9.6e-39 163.7 100 70.0
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 1.3e-38 163.3 116 62.1
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 1.6e-38 162.9 101 70.3
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 2.1e-38 162.5 133 60.2
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 2.1e-38 162.5 98 71.4
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 3.6e-38 161.8 102 69.6
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 4.8e-38 161.4 129 59.7
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 4.8e-38 161.4 101 69.3
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 6.2e-38 161.0 87 77.0
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 6.2e-38 161.0 81 81.5
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 6.2e-38 161.0 130 53.1
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 6.2e-38 161.0 80 83.8
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 8.1e-38 160.6 87 78.2
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.4e-37 159.8 81 80.2
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 2.4e-37 159.1 79 81.0
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 3.1e-37 158.7 81 80.2
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 6.9e-37 157.5 99 69.7
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 9.0e-37 157.1 81 79.0
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 1.5e-36 156.4 99 68.7
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 2.0e-36 156.0 124 58.1
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 4.4e-36 154.8 97 68.0
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 7.6e-36 154.1 118 61.9
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 9.9e-36 153.7 100 67.0
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 2.2e-35 152.5 85 75.3
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 4.9e-35 151.4 71 87.3
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 3.2e-34 148.7 97 64.9
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 9.3e-34 147.1 80 75.0
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.2e-33 146.7 122 57.4
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 1.2e-33 146.7 101 68.3
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 3.9e-32 141.7 109 58.7
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 2.5e-31 139.0 80 70.0
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 3.3e-31 138.7 188 41.0
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 4.3e-31 138.3 189 40.7
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 3.6e-30 135.2 81 67.9
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 5.3e-29 131.3 78 70.5
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 2.6e-28 129.0 80 63.8
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 5.8e-28 127.9 173 39.9
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 2.5e-23 112.5 51 92.2
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 9.6e-23 110.5 54 81.5
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 3.7e-22 108.6 50 92.0
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 8.1e-22 107.5 50 90.0
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 1.5e-20 103.2 51 84.3
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 6.5e-19 97.8 81 59.3
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 5.9e-12 74.7 84 41.7
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 1.0e-11 73.9 34 82.4
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 2.2e-11 72.8 50 58.0
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 3.8e-11 72.0 88 40.9
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 1.4e-10 70.1 50 58.0
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 3.2e-10 68.9 79 44.3
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 9.3e-10 67.4 80 41.2
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 9.3e-10 67.4 37 73.0
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.6e-09 66.6 79 43.0
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.6e-09 66.6 84 40.5
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.6e-09 66.6 79 41.8
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 2.1e-09 66.2 79 40.5
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 4.6e-09 65.1 84 40.5
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 4.6e-09 65.1 84 40.5
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.6e-09 65.1 84 39.3
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.6e-09 65.1 84 39.3
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 4.6e-09 65.1 79 40.5
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 6.1e-09 64.7 77 40.3
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 7.9e-09 64.3 91 37.4
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 7.9e-09 64.3 86 37.2
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.0e-08 63.9 79 38.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 1.0e-08 63.9 90 35.6
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.0e-08 63.9 94 38.3
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.0e-08 63.9 79 39.2
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.0e-08 63.9 79 40.5
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.3e-08 63.5 80 37.5
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.8e-08 63.2 79 38.0
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.8e-08 63.2 87 37.9
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 2.3e-08 62.8 79 38.0
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 2.3e-08 62.8 79 38.0
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 2.3e-08 62.8 79 39.2
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.3e-08 62.8 77 39.0
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 2.3e-08 62.8 89 34.8
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 3.0e-08 62.4 92 37.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 3.9e-08 62.0 123 30.1
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 3.9e-08 62.0 86 37.2
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 3.9e-08 62.0 86 37.2
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 5.1e-08 61.6 79 38.0
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 5.1e-08 61.6 77 40.3
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 5.1e-08 61.6 79 39.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 6.7e-08 61.2 86 36.0
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 6.7e-08 61.2 96 36.5
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 6.7e-08 61.2 96 36.5
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 6.7e-08 61.2 79 39.2
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 8.7e-08 60.8 79 36.7
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 8.7e-08 60.8 79 38.0
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 8.7e-08 60.8 79 38.0
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 8.7e-08 60.8 79 38.0
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 1.1e-07 60.5 84 38.1
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 1.1e-07 60.5 79 38.0
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.1e-07 60.5 96 34.4
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.5e-07 60.1 84 38.1
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.5e-07 60.1 77 40.3
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.5e-07 60.1 84 38.1
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 1.5e-07 60.1 79 39.2
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.9e-07 59.7 85 37.6
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 1.9e-07 59.7 96 35.4
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 2.5e-07 59.3 79 38.0
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 4.3e-07 58.5 79 36.7
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 5.7e-07 58.2 79 38.0
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 5.7e-07 58.2 79 35.4
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 7.4e-07 57.8 79 36.7
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 7.4e-07 57.8 87 36.8
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 7.4e-07 57.8 84 36.9
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 7.4e-07 57.8 79 38.0
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.3e-06 57.0 84 36.9
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 1.6e-06 56.6 87 34.5
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.6e-06 56.6 84 35.7
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 1.6e-06 56.6 90 33.3
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.2e-06 56.2 79 35.4
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 2.2e-06 56.2 105 34.3
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 2.2e-06 56.2 89 36.0
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 2.2e-06 56.2 84 33.3
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.7e-06 55.5 79 35.4
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 3.7e-06 55.5 87 34.5
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 8.2e-06 54.3 77 35.1
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 8.2e-06 54.3 84 35.7


User provided reference genes

Program Settings