Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 5.9e-132 474.2 232 100.0
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.9e-94 348.2 232 75.9
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.5e-90 336.7 233 73.4
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 3.3e-90 335.5 238 71.0
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 4.3e-90 335.1 233 72.5
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.3e-90 335.1 232 71.1
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 5.6e-90 334.7 232 69.8
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 9.5e-90 334.0 233 69.1
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 8.9e-88 327.4 232 68.1
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.5e-87 326.6 244 70.1
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.7e-86 323.2 232 66.4
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 3.7e-86 322.0 236 69.5
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 6.4e-86 321.2 222 72.5
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 8.3e-86 320.9 236 69.9
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.8e-85 319.7 227 71.8
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.1e-85 318.5 221 71.9
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 4.1e-85 318.5 232 67.2
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 2.0e-84 316.2 243 65.4
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 3.5e-84 315.5 232 68.1
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 4.6e-84 315.1 234 67.1
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.6e-84 315.1 232 66.4
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 5.9e-84 314.7 232 66.4
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 3.0e-83 312.4 250 63.2
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 8.6e-83 310.8 237 65.0
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 1.1e-82 310.5 233 67.4
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 4.3e-82 308.5 228 67.5
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 9.5e-82 307.4 223 70.0
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 2.1e-81 306.2 232 65.1
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.8e-81 305.8 232 64.7
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 4.7e-81 305.1 227 65.2
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 8.0e-81 304.3 235 66.4
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.4e-80 303.5 237 64.6
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 3.1e-80 302.4 234 65.4
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 5.2e-80 301.6 232 64.7
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 5.2e-80 301.6 237 62.4
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 5.2e-80 301.6 228 67.1
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.5e-79 300.1 231 67.1
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 3.4e-79 298.9 237 65.0
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.7e-78 296.6 232 65.1
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.7e-78 296.6 239 65.3
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 8.3e-78 294.3 227 63.0
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 8.3e-78 294.3 227 63.4
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.1e-77 293.9 227 63.4
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.9e-77 293.1 227 65.2
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.9e-77 293.1 234 62.4
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 4.1e-77 292.0 225 62.7
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 9.2e-77 290.8 228 64.9
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 9.2e-77 290.8 227 62.1
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.2e-76 290.4 232 64.2
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.6e-76 290.0 225 63.1
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.6e-76 290.0 234 61.5
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 3.5e-76 288.9 227 61.7
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 4.6e-76 288.5 229 61.6
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 4.6e-76 288.5 227 62.1
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 4.6e-76 288.5 227 63.9
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 7.8e-76 287.7 227 61.7
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.3e-75 286.2 227 61.7
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.3e-75 286.2 227 63.4
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 3.0e-75 285.8 229 61.6
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.0e-75 285.8 228 63.2
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 3.0e-75 285.8 227 63.4
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 6.6e-75 284.6 227 61.7
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 8.6e-75 284.3 235 61.7
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.1e-74 283.9 224 62.1
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.1e-74 283.9 236 61.4
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.5e-74 283.5 227 61.7
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 3.3e-74 282.3 230 64.3
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 7.3e-74 281.2 233 60.1
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 9.5e-74 280.8 218 62.8
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 9.5e-74 280.8 234 62.8
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.2e-73 280.4 232 59.5
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.6e-73 280.0 227 60.8
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.6e-73 280.0 226 60.2
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.6e-73 280.0 230 60.0
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.6e-73 280.0 207 71.5
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 2.1e-73 279.6 232 62.1
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.8e-73 279.3 225 61.3
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 6.2e-73 278.1 221 63.8
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 6.2e-73 278.1 231 62.3
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.2e-73 278.1 231 62.3
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.2e-73 278.1 231 62.3
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 6.2e-73 278.1 224 64.3
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.1e-72 277.3 228 62.7
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.1e-72 277.3 230 62.2
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.1e-72 277.3 234 60.3
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 2.3e-72 276.2 232 60.3
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 3.1e-72 275.8 232 60.8
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 3.1e-72 275.8 229 60.3
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 3.1e-72 275.8 223 60.5
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.0e-72 275.4 231 61.9
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 4.0e-72 275.4 232 57.8
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 6.8e-72 274.6 245 58.4
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 8.9e-72 274.2 238 58.8
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 8.9e-72 274.2 225 62.2
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 1.5e-71 273.5 225 60.0
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 1.5e-71 273.5 225 60.0
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 4.4e-71 271.9 226 60.2
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.7e-70 270.0 213 62.0
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.9e-70 269.2 226 58.4
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.9e-69 266.5 233 59.2
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 4.1e-69 265.4 234 56.8
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 4.1e-69 265.4 246 56.1
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 5.4e-69 265.0 179 70.4
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 7.1e-69 264.6 266 53.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.1e-69 264.6 231 60.6
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-68 263.8 232 57.8
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.7e-68 262.7 235 57.0
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 2.7e-68 262.7 251 54.6
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 7.8e-68 261.2 235 56.6
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 7.8e-68 261.2 243 55.6
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.0e-67 260.8 223 61.9
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.3e-67 260.4 256 52.7
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 3.0e-67 259.2 241 54.4
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 5.1e-67 258.5 217 58.5
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.3e-66 255.8 213 60.6
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 5.6e-66 255.0 219 58.0
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 1.6e-65 253.4 272 51.1
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 2.8e-65 252.7 226 55.8
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 4.7e-65 251.9 233 57.1
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 1.1e-64 250.8 160 72.5
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.8e-64 250.0 166 72.9
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 2.4e-64 249.6 215 58.1
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 4.0e-64 248.8 274 48.5
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 4.0e-64 248.8 252 56.0
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.2e-63 247.3 225 56.0
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.5e-63 246.9 227 57.3
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 3.8e-62 242.3 245 52.7
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 6.4e-62 241.5 165 69.7
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 4.1e-61 238.8 145 77.2
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 3.0e-59 232.6 223 52.9
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.9e-59 232.3 177 66.7
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 8.7e-59 231.1 254 48.0
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.5e-58 230.3 244 51.2
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 7.3e-58 228.0 142 73.2
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.4e-56 223.0 199 57.3
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.5e-55 220.3 243 51.4
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.5e-55 220.3 140 73.6
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.9e-54 216.1 146 69.2
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.3e-50 202.2 277 44.0
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 3.6e-49 199.1 131 70.2
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.3e-46 190.7 127 70.9
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.7e-46 190.3 148 59.5
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.4e-45 187.2 130 70.0
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-44 183.7 140 62.1
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.9e-44 181.4 123 69.1
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 8.7e-43 177.9 145 55.9
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.6e-39 166.4 242 46.7
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 9.9e-39 164.5 97 77.3
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 3.8e-38 162.5 98 77.6
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.3e-35 154.1 129 63.6
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 4.8e-25 119.0 112 55.4
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 8.2e-25 118.2 97 62.9
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 9.0e-24 114.8 198 37.4
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.9e-21 107.1 227 30.8
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 1.9e-18 97.1 123 38.2
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.7e-17 94.0 101 51.5
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 3.4e-15 86.3 77 53.2
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 2.9e-14 83.2 102 40.2
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 6.5e-14 82.0 124 33.9
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.1e-13 81.3 89 53.9
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.9e-13 80.5 94 48.9
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 9.4e-13 78.2 117 33.3
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 6.1e-12 75.5 90 47.8
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 6.1e-12 75.5 97 45.4
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 2.0e-10 70.5 80 45.0
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 2.8e-09 66.6 73 47.9


User provided reference genes

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