Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p032500 Quercus lobata HOM05D011519 ORTHO05D010499 9.6e-52 206.5 98 100.0
QL07p032484 Quercus lobata HOM05D009046 ORTHO05D010499 1.4e-47 192.6 98 93.9
Cfa015893 Carpinus fangiana HOM05D009046 ORTHO05D010499 4.5e-17 91.3 66 65.2
Prupe.8G072300 Prunus persica HOM05D011519 ORTHO05D010499 2.2e-16 89.0 68 61.8
QL09p025537 Quercus lobata HOM05D009046 ORTHO05D010499 2.9e-16 88.6 64 62.5
QL09p042668 Quercus lobata HOM05D009046 ORTHO05D010499 3.8e-16 88.2 62 62.9
Potri.013G054600 Populus trichocarpa HOM05D009046 ORTHO05D010499 1.1e-15 86.7 90 52.2
QL09p042742 Quercus lobata HOM05D009046 ORTHO05D010499 3.2e-15 85.1 64 60.9
QL09p042663 Quercus lobata HOM05D009046 ORTHO05D010499 5.5e-15 84.3 64 59.4
Thecc.04G174700 Theobroma cacao HOM05D009046 ORTHO05D010499 9.4e-15 83.6 68 52.9
Thecc.04G174900 Theobroma cacao HOM05D009046 ORTHO05D010499 9.4e-15 83.6 68 52.9
Cfa017052 Carpinus fangiana HOM05D009046 ORTHO05D010499 2.1e-14 82.4 69 56.5
Prupe.8G072400 Prunus persica HOM05D011519 ORTHO05D010499 2.1e-14 82.4 66 54.5
Thecc.04G174500 Theobroma cacao HOM05D009046 ORTHO05D010499 3.6e-14 81.6 68 51.5
QL09p042594 Quercus lobata HOM05D009046 ORTHO05D010499 1.8e-13 79.3 63 57.1
Cpa.g.c34620 Carica papaya HOM05D009046 ORTHO05D010499 3.0e-13 78.6 79 50.6
Cpa.g.sc3.422 Carica papaya HOM05D009046 ORTHO05D010499 3.0e-13 78.6 69 55.1
Thecc.04G176200 Theobroma cacao HOM05D009046 ORTHO05D010499 6.8e-13 77.4 62 54.8
Manes.09G014201 Manihot esculenta HOM05D009046 ORTHO05D010499 8.8e-13 77.0 84 47.6
Cpa.g.sc34.167 Carica papaya HOM05D009046 ORTHO05D010499 1.5e-12 76.3 69 55.1
Manes.09G132801 Manihot esculenta HOM05D009046 ORTHO05D010499 1.5e-12 76.3 75 52.0
Cpa.g.sc76.56 Carica papaya HOM05D009046 ORTHO05D010499 4.4e-12 74.7 81 45.7
Haze_21160 Corylus avellana HOM05D009046 ORTHO05D010499 6.3e-11 70.9 65 55.4
Atru.chr2.2398 Acer truncatum HOM05D009046 ORTHO05D010499 8.3e-11 70.5 93 41.9
Cpa.g.sc3.420 Carica papaya HOM05D009046 ORTHO05D010499 1.1e-10 70.1 68 50.0
FAN09G3689 Fragaria x ananassa HOM05D011519 ORTHO05D010499 1.8e-10 69.3 86 39.5
FAN25G3136 Fragaria x ananassa HOM05D041136 ORTHO05D010499 5.4e-10 67.8 76 47.4
FAN09G0582 Fragaria x ananassa HOM05D011519 ORTHO05D010499 2.7e-09 65.5 86 37.2
Cpa.g.sc48.221 Carica papaya HOM05D009046 ORTHO05D010499 3.5e-09 65.1 67 49.3
FAN11G1022 Fragaria x ananassa HOM05D041136 ORTHO05D010499 4.5e-09 64.7 78 46.2
FAN08G0905 Fragaria x ananassa HOM05D011519 ORTHO05D010499 5.9e-09 64.3 87 36.8
Ciclev10023880m.g Citrus clementina HOM05D009046 ORTHO05D010499 7.7e-09 63.9 60 48.3
Prupe.2G131500 Prunus persica HOM05D009046 ORTHO05D010499 7.7e-09 63.9 93 40.9
FvH4_5g32781 Fragaria vesca HOM05D011519 ORTHO05D010499 1.0e-08 63.5 89 36.0
FAN08G0044 Fragaria x ananassa HOM05D011519 ORTHO05D010499 1.0e-08 63.5 89 36.0
FAN18G2340 Fragaria x ananassa HOM05D011519 ORTHO05D010499 1.0e-08 63.5 89 36.0
Manes.09G012601 Manihot esculenta HOM05D009046 ORTHO05D010499 1.0e-08 63.5 54 50.0
Prupe.2G131400 Prunus persica HOM05D009046 ORTHO05D010499 1.3e-08 63.2 89 41.6
COL.COLO4_20670 Corchorus olitorius HOM05D009046 ORTHO05D010499 1.7e-08 62.8 95 35.8
COL.COLO4_33068 Corchorus olitorius HOM05D009046 ORTHO05D010499 3.8e-08 61.6 89 40.4
FAN08G1050 Fragaria x ananassa HOM05D011519 ORTHO05D010499 3.8e-08 61.6 83 37.3
Nn2g10332 Nelumbo nucifera HOM05D009046 ORTHO05D010499 3.8e-08 61.6 66 40.9
PGR119G0114 Punica granatum HOM05D009046 ORTHO05D010499 3.8e-08 61.6 88 37.5
Prupe.2G131600 Prunus persica HOM05D009046 ORTHO05D010499 5.0e-08 61.2 90 40.0
COL.COLO4_33059 Corchorus olitorius HOM05D009046 ORTHO05D010499 6.5e-08 60.8 75 45.3
COL.COLO4_08218 Corchorus olitorius HOM05D017127 ORTHO05D019068 1.5e-07 59.7 64 46.9
FAN05G4016 Fragaria x ananassa HOM05D011519 ORTHO05D010499 1.5e-07 59.7 87 35.6
FAN12G0829 Fragaria x ananassa HOM05D011519 ORTHO05D010499 1.5e-07 59.7 87 37.9
FAN14G4714 Fragaria x ananassa HOM05D019556 ORTHO05D017924 2.5e-07 58.9 92 41.3
FvH4_6g10090 Fragaria vesca HOM05D019556 ORTHO05D017924 7.2e-07 57.4 83 43.4
FvH4_6g21652 Fragaria vesca HOM05D011519 ORTHO05D010499 9.4e-07 57.0 70 40.0
FAN14G2716 Fragaria x ananassa HOM05D011519 ORTHO05D010499 9.4e-07 57.0 73 39.7
Sc08g0001130 Simmondsia chinensis HOM05D000057 ORTHO05D000021 1.2e-06 56.6 58 46.6
CANSAT25G1924 Cannabis sativa HOM05D000057 ORTHO05D000021 1.6e-06 56.2 86 37.2
TAR613G0002 Trochodendron aralioides HOM05D000057 ORTHO05D010499 1.6e-06 56.2 72 41.7
TAR613G0003 Trochodendron aralioides HOM05D000057 ORTHO05D010499 1.6e-06 56.2 72 41.7
TAR633G0605 Trochodendron aralioides HOM05D012974 ORTHO05D012969 1.6e-06 56.2 64 40.6
TAR613G0001 Trochodendron aralioides HOM05D009046 ORTHO05D010499 2.1e-06 55.8 73 41.1
TAR633G0276 Trochodendron aralioides HOM05D012974 ORTHO05D012969 2.1e-06 55.8 65 40.0
BcaNung04305 Brassica carinata HOM05D000057 ORTHO05D000021 2.7e-06 55.5 78 38.5
BcaNung06505 Brassica carinata HOM05D000057 ORTHO05D000021 2.7e-06 55.5 62 45.2
A01p03710 Brassica napus HOM05D000057 ORTHO05D000021 2.7e-06 55.5 78 38.5
C01p03990 Brassica napus HOM05D000057 ORTHO05D000021 2.7e-06 55.5 78 38.5
BraA01t00355Z Brassica rapa HOM05D000057 ORTHO05D000021 2.7e-06 55.5 78 38.5
FvH4_2g02280 Fragaria vesca HOM05D000057 ORTHO05D000021 2.7e-06 55.5 85 36.5
FAN02G1285 Fragaria x ananassa HOM05D011519 ORTHO05D010499 2.7e-06 55.5 87 37.9
Sp7g32570 Schrenkiella parvula HOM05D000057 ORTHO05D000021 2.7e-06 55.5 63 44.4
AL7G16400 Arabidopsis lyrata HOM05D000057 ORTHO05D000021 3.6e-06 55.1 78 38.5
AT4G34800 Arabidopsis thaliana HOM05D000057 ORTHO05D000021 3.6e-06 55.1 78 38.5
BcaNung06506 Brassica carinata HOM05D000057 ORTHO05D000021 3.6e-06 55.1 63 44.4
BcaNung00652 Brassica carinata HOM05D000057 ORTHO05D000021 4.7e-06 54.7 78 38.5
BcaNung02356 Brassica carinata HOM05D000057 ORTHO05D000021 4.7e-06 54.7 78 38.5
C07p60790 Brassica napus HOM05D000057 ORTHO05D000021 4.7e-06 54.7 78 38.5
BolC1t00391H Brassica oleracea HOM05D000057 ORTHO05D000021 4.7e-06 54.7 78 38.5
CARHR243100 Cardamine hirsuta HOM05D000057 ORTHO05D000021 4.7e-06 54.7 78 38.5
Thhalv10026666m.g Eutrema salsugineum HOM05D000057 ORTHO05D000021 4.7e-06 54.7 63 44.4
Nn6g32318 Nelumbo nucifera HOM05D000057 ORTHO05D000021 4.7e-06 54.7 60 36.7
SalBow6G5632 Salvia bowleyana HOM05D000057 ORTHO05D000021 6.1e-06 54.3 59 47.5
FvH4_4g12051 Fragaria vesca HOM05D011519 ORTHO05D010499 8.0e-06 53.9 75 37.3
Potri.004G166100 Populus trichocarpa HOM05D000057 ORTHO05D000021 8.0e-06 53.9 84 34.5
Sabra09G0097600 Salix brachista HOM05D000057 ORTHO05D000021 8.0e-06 53.9 63 41.3
SGA_v2.0_scaffold58G20443 Striga asiatica HOM05D000057 ORTHO05D000021 8.0e-06 53.9 74 39.2


User provided reference genes

Program Settings