Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p032484 Quercus lobata HOM05D009046 ORTHO05D010499 3.7e-51 204.5 98 100.0
QL07p032500 Quercus lobata HOM05D011519 ORTHO05D010499 1.4e-47 192.6 98 93.9
Potri.013G054600 Populus trichocarpa HOM05D009046 ORTHO05D010499 2.2e-16 89.0 90 53.3
Cfa015893 Carpinus fangiana HOM05D009046 ORTHO05D010499 2.5e-15 85.5 65 63.1
QL09p025537 Quercus lobata HOM05D009046 ORTHO05D010499 2.5e-15 85.5 64 60.9
QL09p042668 Quercus lobata HOM05D009046 ORTHO05D010499 3.2e-15 85.1 62 61.3
Prupe.8G072300 Prunus persica HOM05D011519 ORTHO05D010499 1.6e-14 82.8 68 58.8
QL09p042742 Quercus lobata HOM05D009046 ORTHO05D010499 2.7e-14 82.0 64 59.4
Cfa017052 Carpinus fangiana HOM05D009046 ORTHO05D010499 4.7e-14 81.3 80 52.5
QL09p042663 Quercus lobata HOM05D009046 ORTHO05D010499 4.7e-14 81.3 64 57.8
Thecc.04G174700 Theobroma cacao HOM05D009046 ORTHO05D010499 1.0e-13 80.1 68 51.5
Thecc.04G174900 Theobroma cacao HOM05D009046 ORTHO05D010499 1.8e-13 79.3 66 53.0
Thecc.04G174500 Theobroma cacao HOM05D009046 ORTHO05D010499 6.8e-13 77.4 66 51.5
Prupe.8G072400 Prunus persica HOM05D011519 ORTHO05D010499 1.5e-12 76.3 66 51.5
QL09p042594 Quercus lobata HOM05D009046 ORTHO05D010499 2.0e-12 75.9 63 55.6
Cpa.g.c34620 Carica papaya HOM05D009046 ORTHO05D010499 2.6e-12 75.5 78 50.0
Cpa.g.sc3.422 Carica papaya HOM05D009046 ORTHO05D010499 2.6e-12 75.5 95 44.2
Manes.09G014201 Manihot esculenta HOM05D009046 ORTHO05D010499 2.6e-12 75.5 71 50.7
Thecc.04G176200 Theobroma cacao HOM05D009046 ORTHO05D010499 7.5e-12 73.9 62 53.2
Manes.09G132801 Manihot esculenta HOM05D009046 ORTHO05D010499 2.8e-11 72.0 73 50.7
Haze_21160 Corylus avellana HOM05D009046 ORTHO05D010499 3.7e-11 71.6 65 56.9
Cpa.g.sc34.167 Carica papaya HOM05D009046 ORTHO05D010499 6.3e-11 70.9 74 50.0
Cpa.g.sc76.56 Carica papaya HOM05D009046 ORTHO05D010499 1.1e-10 70.1 81 44.4
Atru.chr2.2398 Acer truncatum HOM05D009046 ORTHO05D010499 1.6e-09 66.2 93 40.9
Cpa.g.sc3.420 Carica papaya HOM05D009046 ORTHO05D010499 3.5e-09 65.1 77 45.5
FAN09G3689 Fragaria x ananassa HOM05D011519 ORTHO05D010499 7.7e-09 63.9 86 37.2
Cpa.g.sc48.221 Carica papaya HOM05D009046 ORTHO05D010499 2.9e-08 62.0 67 47.8
FAN25G3136 Fragaria x ananassa HOM05D041136 ORTHO05D010499 3.8e-08 61.6 66 47.0
COL.COLO4_20670 Corchorus olitorius HOM05D009046 ORTHO05D010499 5.0e-08 61.2 95 35.8
COL.COLO4_33068 Corchorus olitorius HOM05D009046 ORTHO05D010499 6.5e-08 60.8 71 46.5
Ciclev10023880m.g Citrus clementina HOM05D009046 ORTHO05D010499 8.5e-08 60.5 60 46.7
Manes.09G012601 Manihot esculenta HOM05D009046 ORTHO05D010499 8.5e-08 60.5 54 48.1
Prupe.2G131400 Prunus persica HOM05D009046 ORTHO05D010499 1.9e-07 59.3 89 40.4
FAN08G0905 Fragaria x ananassa HOM05D011519 ORTHO05D010499 2.5e-07 58.9 87 34.5
FAN11G1022 Fragaria x ananassa HOM05D041136 ORTHO05D010499 3.2e-07 58.5 68 45.6
Prupe.2G131500 Prunus persica HOM05D009046 ORTHO05D010499 3.2e-07 58.5 91 39.6
FvH4_5g32781 Fragaria vesca HOM05D011519 ORTHO05D010499 4.2e-07 58.2 89 33.7
FAN08G0044 Fragaria x ananassa HOM05D011519 ORTHO05D010499 4.2e-07 58.2 89 33.7
FAN18G2340 Fragaria x ananassa HOM05D011519 ORTHO05D010499 4.2e-07 58.2 89 33.7
PGR119G0114 Punica granatum HOM05D009046 ORTHO05D010499 5.5e-07 57.8 83 36.1
FAN09G0582 Fragaria x ananassa HOM05D011519 ORTHO05D010499 7.2e-07 57.4 86 33.7
Sc08g0001130 Simmondsia chinensis HOM05D000057 ORTHO05D000021 7.2e-07 57.4 58 46.6
FAN05G4016 Fragaria x ananassa HOM05D011519 ORTHO05D010499 1.2e-06 56.6 87 33.3
A01p03710 Brassica napus HOM05D000057 ORTHO05D000021 1.6e-06 56.2 63 44.4
BraA01t00355Z Brassica rapa HOM05D000057 ORTHO05D000021 1.6e-06 56.2 63 44.4
COL.COLO4_08218 Corchorus olitorius HOM05D017127 ORTHO05D019068 1.6e-06 56.2 64 45.3
COL.COLO4_33059 Corchorus olitorius HOM05D009046 ORTHO05D010499 1.6e-06 56.2 57 52.6
FvH4_2g02280 Fragaria vesca HOM05D000057 ORTHO05D000021 1.6e-06 56.2 85 36.5
FAN08G1050 Fragaria x ananassa HOM05D011519 ORTHO05D010499 1.6e-06 56.2 83 34.9
Nn2g10332 Nelumbo nucifera HOM05D009046 ORTHO05D010499 1.6e-06 56.2 61 41.0
Potri.004G166100 Populus trichocarpa HOM05D000057 ORTHO05D000021 1.6e-06 56.2 84 34.5
Prupe.2G131600 Prunus persica HOM05D009046 ORTHO05D010499 1.6e-06 56.2 90 37.8
TAR613G0002 Trochodendron aralioides HOM05D000057 ORTHO05D010499 1.6e-06 56.2 72 41.7
TAR613G0003 Trochodendron aralioides HOM05D000057 ORTHO05D010499 1.6e-06 56.2 72 41.7
BcaNung04305 Brassica carinata HOM05D000057 ORTHO05D000021 2.1e-06 55.8 63 44.4
BcaNung06505 Brassica carinata HOM05D000057 ORTHO05D000021 2.1e-06 55.8 62 45.2
BcaNung06506 Brassica carinata HOM05D000057 ORTHO05D000021 2.1e-06 55.8 86 34.9
C01p03990 Brassica napus HOM05D000057 ORTHO05D000021 2.1e-06 55.8 63 44.4
Sp7g32570 Schrenkiella parvula HOM05D000057 ORTHO05D000021 2.1e-06 55.8 63 44.4
AL7G16400 Arabidopsis lyrata HOM05D000057 ORTHO05D000021 2.7e-06 55.5 63 44.4
AT4G34800 Arabidopsis thaliana HOM05D000057 ORTHO05D000021 2.7e-06 55.5 63 44.4
FAN12G0829 Fragaria x ananassa HOM05D011519 ORTHO05D010499 2.7e-06 55.5 87 35.6
Manes.02G193700 Manihot esculenta HOM05D000057 ORTHO05D000021 2.7e-06 55.5 78 34.6
BcaNung00652 Brassica carinata HOM05D000057 ORTHO05D000021 3.6e-06 55.1 63 44.4
BcaNung02356 Brassica carinata HOM05D000057 ORTHO05D000021 3.6e-06 55.1 86 34.9
C07p60790 Brassica napus HOM05D000057 ORTHO05D000021 3.6e-06 55.1 86 34.9
BolC1t00391H Brassica oleracea HOM05D000057 ORTHO05D000021 3.6e-06 55.1 63 44.4
CARHR243100 Cardamine hirsuta HOM05D000057 ORTHO05D000021 3.6e-06 55.1 63 44.4
AUR62016878 Chenopodium quinoa HOM05D000057 ORTHO05D000021 3.6e-06 55.1 66 42.4
Thhalv10026666m.g Eutrema salsugineum HOM05D000057 ORTHO05D000021 3.6e-06 55.1 63 44.4
Nn6g32318 Nelumbo nucifera HOM05D000057 ORTHO05D000021 3.6e-06 55.1 60 36.7
SalBow6G5632 Salvia bowleyana HOM05D000057 ORTHO05D000021 3.6e-06 55.1 59 47.5
AUR62010344 Chenopodium quinoa HOM05D000057 ORTHO05D000021 4.7e-06 54.7 66 42.4
Nn5g29293 Nelumbo nucifera HOM05D000057 ORTHO05D000021 4.7e-06 54.7 62 41.9
CiPaw.06G126000 Carya illinoinensis HOM05D000057 ORTHO05D000021 6.1e-06 54.3 60 41.7
Nn5g29325 Nelumbo nucifera HOM05D000057 ORTHO05D000021 6.1e-06 54.3 68 38.2
Sabra09G0097600 Salix brachista HOM05D000057 ORTHO05D000021 6.1e-06 54.3 63 41.3
CANSAT25G1924 Cannabis sativa HOM05D000057 ORTHO05D000021 8.0e-06 53.9 66 42.4
ECA246G5008 Erigeron canadensis HOM05D000057 ORTHO05D000021 8.0e-06 53.9 65 38.5
Lj3g0000867 Lotus japonicus HOM05D000057 ORTHO05D000021 8.0e-06 53.9 61 41.0
Manes.02G193800 Manihot esculenta HOM05D000057 ORTHO05D000021 8.0e-06 53.9 79 38.0
Potri.004G165600 Populus trichocarpa HOM05D000057 ORTHO05D000021 8.0e-06 53.9 62 38.7


User provided reference genes

Program Settings