Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 2.8e-178 628.6 350 100.0
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 3.4e-67 259.6 366 46.7
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 1.8e-63 247.3 358 48.6
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 6.9e-60 235.3 351 51.3
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 5.9e-59 232.3 406 41.4
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 1.0e-58 231.5 362 44.5
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 1.6e-56 224.2 267 51.7
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 2.0e-54 217.2 232 53.0
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 3.3e-54 216.5 422 42.9
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 9.7e-54 214.9 370 43.5
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 2.2e-53 213.8 399 41.4
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.1e-52 211.5 358 42.5
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 5.3e-52 209.1 365 41.6
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 3.4e-51 206.5 207 60.9
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 4.5e-51 206.1 344 43.6
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.3e-50 204.5 401 40.1
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.9e-50 203.4 404 39.9
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.0e-50 202.6 408 40.2
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.9e-49 200.7 251 48.6
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 9.4e-49 198.4 437 37.5
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 1.0e-47 194.9 360 40.0
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 2.3e-47 193.7 347 41.8
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 6.7e-47 192.2 350 43.7
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 6.7e-47 192.2 407 36.4
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.1e-46 191.4 407 35.9
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 1.5e-46 191.0 260 47.7
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 5.7e-46 189.1 233 47.6
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 9.7e-46 188.3 373 38.3
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.7e-45 186.4 319 39.2
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-44 184.9 429 37.5
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.1e-44 183.3 277 46.2
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.1e-44 183.3 277 46.2
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.1e-44 183.3 277 46.2
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 5.3e-44 182.6 429 37.8
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 7.0e-44 182.2 372 40.3
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 1.2e-43 181.4 261 47.9
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 1.2e-43 181.4 355 40.0
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 5.9e-43 179.1 348 39.4
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 7.7e-43 178.7 257 43.6
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 7.7e-43 178.7 346 42.2
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 2.2e-42 177.2 394 38.3
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 5.0e-42 176.0 195 53.8
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 5.0e-42 176.0 405 37.8
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.1e-41 174.9 227 47.1
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 1.1e-41 174.9 398 39.4
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.1e-41 174.9 224 45.5
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.1e-41 174.9 201 50.2
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 1.4e-41 174.5 367 35.1
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.9e-41 174.1 444 36.3
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 3.2e-41 173.3 383 35.2
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 5.5e-41 172.6 272 41.5
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 7.2e-41 172.2 231 44.2
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.2e-41 172.2 272 41.5
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 9.4e-41 171.8 211 51.7
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 1.2e-40 171.4 224 44.6
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 2.1e-40 170.6 361 40.4
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 2.1e-40 170.6 270 42.6
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 4.7e-40 169.5 203 53.7
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 8.0e-40 168.7 328 39.3
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.0e-39 168.3 421 35.9
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 1.8e-39 167.5 338 37.3
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 3.0e-39 166.8 351 37.0
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 3.0e-39 166.8 151 61.6
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 1.1e-38 164.9 266 41.4
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 1.5e-38 164.5 344 36.0
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 1.5e-38 164.5 201 50.2
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 2.0e-38 164.1 440 35.5
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.3e-38 163.3 265 40.8
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 9.7e-38 161.8 431 33.2
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 2.2e-37 160.6 209 46.9
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 3.7e-37 159.8 345 35.4
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 5.3e-36 156.0 342 36.0
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 7.0e-36 155.6 173 51.4
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 9.1e-36 155.2 365 35.3
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.2e-35 154.8 343 37.9
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.6e-35 154.5 329 38.0
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 2.6e-35 153.7 292 38.7
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 3.5e-35 153.3 319 39.5
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 1.3e-34 151.4 312 37.5
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 1.7e-34 151.0 332 39.2
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 6.5e-34 149.1 376 34.8
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 1.5e-33 147.9 245 41.6
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 1.5e-33 147.9 268 41.0
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 4.2e-33 146.4 203 46.8
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 9.4e-33 145.2 402 32.1
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 2.1e-32 144.1 298 37.9
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 2.1e-32 144.1 385 33.0
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 2.7e-32 143.7 153 53.6
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 2.7e-32 143.7 232 43.1
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 6.1e-32 142.5 163 55.2
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 1.8e-31 141.0 309 37.9
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 1.8e-31 141.0 329 36.2
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 1.5e-30 137.9 342 36.8
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.6e-30 137.1 333 35.7
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 3.4e-30 136.7 364 33.5
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 2.2e-29 134.0 271 37.3
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 4.8e-29 132.9 155 48.4
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.8e-29 132.9 263 37.6
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 3.1e-28 130.2 443 29.1
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 4.1e-28 129.8 365 31.8
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 2.0e-27 127.5 277 36.1
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 3.5e-27 126.7 297 34.3
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 6.5e-26 122.5 245 41.2
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 1.9e-25 120.9 307 31.3
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.2e-25 120.2 264 38.3
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 4.2e-25 119.8 213 38.5
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 9.4e-25 118.6 226 35.4
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 1.2e-24 118.2 395 29.9
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 1.6e-24 117.9 114 56.1
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.1e-24 117.5 236 37.3
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 6.1e-24 115.9 258 34.1
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.0e-23 115.2 206 40.3
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 1.4e-23 114.8 338 31.7
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.4e-23 114.8 205 39.0
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 6.8e-23 112.5 218 36.7
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 1.2e-22 111.7 278 32.0
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.0e-22 110.9 265 37.0
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 2.6e-22 110.5 224 36.2
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 5.7e-22 109.4 274 30.7
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 1.3e-21 108.2 227 38.8
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 1.3e-21 108.2 257 34.2
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.7e-21 107.8 304 30.9
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 2.8e-21 107.1 261 33.3
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 3.7e-21 106.7 190 35.3
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 3.7e-21 106.7 310 31.0
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 6.3e-21 105.9 267 29.2
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 8.3e-21 105.5 228 31.1
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 5.4e-20 102.8 211 35.5
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 2.7e-19 100.5 204 37.7
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 1.0e-18 98.6 269 31.6
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 6.6e-18 95.9 225 32.0
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 8.6e-18 95.5 80 63.8
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.5e-17 94.7 348 27.9
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 7.2e-17 92.4 257 30.7
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 1.6e-16 91.3 197 36.0
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 4.0e-15 86.7 263 27.0
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 5.2e-15 86.3 243 31.7
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 5.2e-15 86.3 372 26.3
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 1.2e-14 85.1 209 30.6
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 2.0e-14 84.3 193 31.1
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 2.0e-14 84.3 240 31.7
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 9.8e-14 82.0 209 35.4
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 1.7e-13 81.3 244 28.7
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 2.8e-13 80.5 63 65.1
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 9.2e-12 75.5 266 29.7
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.2e-11 75.1 226 27.0
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.0e-11 74.3 226 27.4
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 2.7e-11 73.9 102 47.1
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 2.7e-11 73.9 102 47.1
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 3.5e-11 73.6 261 27.2
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 5.9e-11 72.8 216 32.4
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.9e-10 70.5 226 27.4
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 6.6e-10 69.3 224 26.8
Oeu057996.1 Olea europaea HOM05D003589 ORTHO05D005170 1.5e-09 68.2 207 34.3
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 1.9e-09 67.8 235 25.5
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 5.6e-09 66.2 256 29.3
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 3.6e-08 63.5 279 25.1
Nn2g10296 Nelumbo nucifera HOM05D003589 ORTHO05D005170 8.0e-08 62.4 186 32.3
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 4.0e-07 60.1 256 28.1
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 1.5e-06 58.2 238 26.1
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 1.5e-06 58.2 296 26.4


User provided reference genes

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