Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 2.4e-240 835.1 432 100.0
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 4.6e-231 804.3 433 96.8
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.3e-177 626.7 435 76.6
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 1.4e-158 563.5 435 69.7
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 4.9e-156 555.1 433 66.7
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 2.7e-154 549.3 377 78.5
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 7.8e-154 547.7 435 67.1
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 2.3e-153 546.2 436 67.2
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 6.6e-153 544.7 377 77.5
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.1e-151 539.7 435 65.7
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 2.3e-150 536.2 435 65.1
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 8.3e-148 527.7 435 64.1
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 6.0e-146 521.5 434 63.8
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 1.3e-145 520.4 438 65.8
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 8.6e-145 517.7 432 64.4
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 1.9e-144 516.5 445 64.0
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 1.9e-144 516.5 437 64.1
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 3.3e-144 515.8 380 70.5
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 5.2e-142 508.4 440 62.5
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 2.6e-141 506.1 446 63.7
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 1.9e-139 500.0 457 62.4
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 9.2e-139 497.7 446 62.1
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 1.6e-138 496.9 444 63.3
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 6.6e-137 491.5 436 61.5
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 7.3e-136 488.0 436 62.2
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 2.0e-133 479.9 448 60.3
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 6.4e-132 474.9 433 60.3
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 8.4e-132 474.6 386 66.8
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 4.2e-131 472.2 377 66.8
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 4.2e-131 472.2 381 64.6
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 2.7e-130 469.5 397 63.7
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 6.6e-129 464.9 439 59.5
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 1.9e-128 463.4 394 62.7
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 1.3e-127 460.7 437 59.7
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 4.8e-127 458.8 436 56.4
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 8.1e-127 458.0 434 58.8
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 1.8e-126 456.8 436 58.0
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 2.4e-126 456.4 434 58.3
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 5.3e-126 455.3 437 57.0
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 5.8e-125 451.8 437 57.2
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 3.2e-123 446.0 436 56.9
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 1.6e-122 443.7 390 63.1
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 3.0e-121 439.5 384 62.0
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 3.0e-121 439.5 461 54.7
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 1.5e-120 437.2 396 60.6
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 1.9e-120 436.8 387 63.0
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 4.3e-120 435.6 436 56.7
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 4.8e-119 432.2 432 55.3
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 2.6e-117 426.4 433 54.7
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 1.3e-116 424.1 435 54.7
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 1.7e-116 423.7 390 59.0
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 2.9e-116 422.9 432 54.4
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 6.4e-116 421.8 435 54.0
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 3.2e-115 419.5 432 53.9
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 1.2e-114 417.5 444 53.4
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 1.6e-114 417.2 460 52.4
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 2.7e-114 416.4 432 53.9
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 4.6e-114 415.6 436 54.1
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 4.6e-114 415.6 437 55.1
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 1.8e-113 413.7 435 54.9
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 3.0e-113 412.9 413 57.4
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 8.7e-113 411.4 436 54.1
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 1.1e-112 411.0 439 53.3
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 1.9e-112 410.2 435 52.9
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 2.5e-112 409.8 435 53.6
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 2.8e-111 406.4 436 53.4
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 2.8e-111 406.4 436 53.0
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 1.8e-110 403.7 433 52.4
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 7.6e-109 398.3 466 50.6
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 7.6e-109 398.3 513 48.9
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 7.9e-106 388.3 438 52.5
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 1.0e-105 387.9 364 60.4
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 9.6e-104 381.3 443 51.0
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 2.8e-103 379.8 442 50.0
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 3.7e-103 379.4 392 53.6
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 2.2e-100 370.2 396 53.0
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 1.1e-99 367.9 544 44.1
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 2.3e-97 360.1 318 60.7
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 6.7e-97 358.6 442 47.5
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 3.3e-96 356.3 435 49.0
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 3.7e-95 352.8 441 48.5
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 6.3e-95 352.1 441 47.6
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 2.4e-94 350.1 215 82.3
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 1.7e-92 344.0 340 57.1
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 3.8e-92 342.8 343 56.6
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 2.7e-90 336.7 445 46.3
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 1.0e-89 334.7 448 46.2
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 1.4e-89 334.3 358 54.5
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 2.0e-88 330.5 327 56.9
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 1.6e-82 310.8 384 49.7
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 2.6e-80 303.5 388 44.6
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.0e-77 293.9 200 74.0
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 2.6e-77 293.5 342 50.0
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 2.2e-76 290.4 421 42.0
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 1.1e-75 288.1 349 48.7
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 7.0e-70 268.9 286 52.4
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 7.7e-69 265.4 429 41.3
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.6e-66 257.7 248 52.8
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 3.6e-66 256.5 392 44.6
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 1.3e-60 238.0 442 39.1
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 2.5e-51 207.2 323 41.8
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 2.9e-44 183.7 246 45.5
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 1.5e-43 181.4 387 34.1
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 2.5e-43 180.6 377 33.2
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 7.3e-43 179.1 117 74.4
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.2e-42 178.3 382 33.5
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 3.6e-42 176.8 382 33.5
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 4.6e-37 159.8 173 53.2
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 7.8e-37 159.1 294 38.4
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 1.5e-32 144.8 125 65.6
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 4.6e-29 133.3 167 50.3
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 3.9e-28 130.2 462 27.7
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 4.7e-26 123.2 97 59.8
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 2.4e-17 94.4 262 30.9
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 2.6e-16 90.9 102 51.0
COL.COLO4_14761 Corchorus olitorius HOM05D006045 ORTHO05D007678 5.1e-12 76.6 69 62.3
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 4.8e-10 70.1 106 43.4
Dinv35575 Davidia involucrata HOM05D006045 ORTHO05D007678 1.7e-07 61.6 207 31.9
Medtr7g062690 Medicago truncatula HOM05D006045 ORTHO05D007678 2.2e-07 61.2 68 50.0
unitig_21.g21014 Utricularia gibba HOM05D006045 ORTHO05D007678 7.1e-06 56.2 96 42.7


User provided reference genes

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