Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 2.3e-196 688.7 349 100.0
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 3.4e-168 595.1 300 99.7
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 1.1e-147 526.9 300 86.7
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.6e-133 479.9 311 79.7
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 6.8e-132 474.6 298 78.5
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.5e-131 473.4 300 78.0
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 2.6e-131 472.6 300 76.0
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 2.6e-131 472.6 300 77.7
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 9.8e-131 470.7 300 76.7
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 1.3e-130 470.3 300 77.7
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.7e-130 469.9 300 76.7
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.7e-130 469.9 300 76.7
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.7e-130 469.9 300 75.7
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 2.8e-130 469.2 300 76.0
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.1e-129 467.2 300 75.3
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 1.1e-129 467.2 300 76.7
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 5.4e-129 464.9 300 75.3
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 5.4e-129 464.9 300 76.3
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 7.0e-129 464.5 300 74.7
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 9.1e-129 464.2 299 76.3
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 2.0e-128 463.0 300 76.0
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 2.7e-128 462.6 300 75.0
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.7e-128 462.6 300 75.7
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.0e-127 460.7 300 75.7
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 2.2e-127 459.5 300 74.3
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 2.9e-127 459.1 300 75.3
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.9e-127 459.1 300 75.0
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 8.5e-127 457.6 300 75.3
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.9e-126 456.4 299 74.9
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 4.2e-126 455.3 300 74.7
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 5.5e-126 454.9 300 74.7
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 9.5e-126 454.1 299 74.2
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.2e-125 453.8 300 73.0
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 3.6e-125 452.2 300 74.7
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 4.7e-125 451.8 298 73.5
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 4.7e-125 451.8 304 73.0
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 8.0e-125 451.1 300 72.7
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 1.0e-124 450.7 300 73.7
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.8e-124 449.9 298 75.2
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 1.8e-124 449.9 298 74.2
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.8e-124 449.9 308 71.8
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 4.0e-124 448.7 299 73.2
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 1.2e-123 447.2 298 73.8
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 3.4e-123 445.7 300 72.3
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 9.8e-123 444.1 300 71.3
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.3e-122 443.7 300 71.3
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 1.3e-122 443.7 301 73.4
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 2.8e-122 442.6 297 72.1
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 5.4e-121 438.3 300 71.0
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 9.2e-121 437.6 300 71.3
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 9.2e-121 437.6 298 73.8
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 2.7e-120 436.0 301 72.1
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 2.7e-120 436.0 303 72.6
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 3.5e-120 435.6 302 71.9
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 3.5e-120 435.6 301 73.8
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 4.5e-120 435.3 298 71.8
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 1.7e-119 433.3 298 71.5
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 3.8e-119 432.2 301 69.4
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 3.8e-119 432.2 299 73.2
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 5.0e-119 431.8 300 70.0
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 5.0e-119 431.8 301 69.4
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 8.6e-119 431.0 299 69.9
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 1.1e-118 430.6 298 72.5
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 1.9e-118 429.9 301 70.8
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 2.5e-118 429.5 298 71.5
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 2.5e-118 429.5 298 71.5
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 2.5e-118 429.5 303 69.6
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 9.5e-118 427.6 300 70.3
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.6e-117 426.8 298 71.1
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.6e-117 426.8 298 71.5
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.1e-117 426.4 301 69.1
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.8e-117 426.0 301 68.8
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 3.6e-117 425.6 298 70.5
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 3.6e-117 425.6 301 70.4
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 3.6e-117 425.6 298 71.1
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.0e-116 424.1 298 70.5
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.0e-116 424.1 301 68.8
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 5.2e-116 421.8 298 69.5
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 2.0e-115 419.9 303 69.0
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.6e-115 419.5 301 68.1
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 2.6e-115 419.5 298 70.1
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 4.4e-115 418.7 298 69.5
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 1.3e-114 417.2 298 69.1
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 1.3e-114 417.2 298 69.1
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.9e-114 415.2 299 68.9
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 6.4e-114 414.8 300 66.0
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 6.4e-114 414.8 299 68.6
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 8.3e-114 414.5 298 69.5
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 5.4e-113 411.8 298 69.5
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 7.0e-113 411.4 299 69.2
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 9.2e-113 411.0 296 68.2
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.6e-112 410.2 300 65.3
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 7.8e-112 407.9 259 77.6
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 8.6e-111 404.4 298 68.5
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 8.6e-111 404.4 298 68.5
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 3.6e-109 399.1 296 66.2
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 1.3e-106 390.6 299 66.9
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.7e-106 390.2 314 62.1
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 1.4e-105 387.1 389 53.7
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 9.2e-105 384.4 301 63.5
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.7e-103 380.2 300 63.7
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.9e-102 376.7 300 64.0
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 8.1e-101 371.3 498 44.0
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 4.4e-91 339.0 219 76.3
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 6.4e-90 335.1 290 62.4
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.0e-87 327.8 250 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.3e-87 327.4 305 54.8
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.9e-86 323.6 204 77.5
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 1.8e-84 317.0 301 53.2
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 4.9e-82 308.9 299 49.8
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.3e-78 295.8 158 92.4
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 1.6e-77 293.9 218 67.4
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 3.8e-74 282.7 306 49.3
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.4e-60 237.7 140 82.1
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 2.0e-59 233.8 219 53.9
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 5.5e-57 225.7 166 68.7
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 9.3e-57 224.9 164 72.0
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 3.0e-55 219.9 201 58.2
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 5.7e-54 215.7 142 73.2
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 7.4e-54 215.3 134 79.1
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.3e-53 214.5 153 68.6
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 1.3e-50 204.5 293 38.6
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 5.0e-42 176.0 130 67.7
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.1e-40 170.6 149 53.7
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 3.3e-38 163.3 307 34.9
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 2.4e-36 157.1 200 48.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 6.9e-36 155.6 193 49.2
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 6.5e-26 122.5 146 51.4
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.0e-23 115.2 114 49.1
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 2.3e-23 114.0 94 57.4
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 1.3e-18 98.2 100 47.0
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.7e-13 81.3 85 43.5
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 5.9e-11 72.8 53 67.9
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 6.1e-08 62.8 40 65.0
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 2.6e-06 57.4 35 74.3
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 7.5e-06 55.8 35 68.6


User provided reference genes

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