Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 4.8e-252 874.0 437 100.0
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 4.1e-219 764.6 436 85.8
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.9e-200 702.6 437 79.9
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 9.5e-200 700.3 437 76.9
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 2.1e-199 699.1 436 78.0
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 8.0e-199 697.2 437 77.1
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 2.3e-198 695.7 433 76.9
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 2.3e-198 695.7 436 77.5
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 3.1e-198 695.3 436 77.1
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 4.0e-198 694.9 436 76.8
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 8.9e-198 693.7 436 77.3
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 5.8e-197 691.0 433 78.1
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 7.5e-197 690.6 433 76.4
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 9.8e-197 690.3 433 76.4
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.7e-196 689.5 433 76.2
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.7e-196 688.3 435 76.3
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 6.4e-196 687.6 430 77.9
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 4.1e-195 684.9 436 76.6
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 4.1e-195 684.9 436 76.6
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 5.4e-195 684.5 436 76.1
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 2.7e-194 682.2 437 74.8
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 7.8e-194 680.6 433 75.8
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 7.8e-194 680.6 436 75.9
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.0e-193 680.2 433 76.4
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 2.3e-193 679.1 433 75.1
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 2.3e-193 679.1 438 76.3
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.9e-193 678.3 435 75.9
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 6.6e-193 677.6 436 75.9
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 8.6e-193 677.2 436 75.2
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.2e-191 673.3 433 74.1
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 3.6e-191 671.8 437 74.6
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 2.3e-190 669.1 433 74.4
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 3.1e-190 668.7 432 74.3
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 1.5e-189 666.4 433 74.1
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 3.4e-189 665.2 430 75.1
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 3.4e-189 665.2 437 76.2
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 9.8e-189 663.7 430 74.4
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 8.3e-188 660.6 437 74.1
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 1.4e-187 659.8 434 73.7
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 4.1e-187 658.3 437 73.2
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 1.2e-186 656.8 438 73.5
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 2.7e-186 655.6 435 74.0
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 4.6e-186 654.8 432 72.5
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.3e-185 653.3 432 72.9
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.3e-185 652.5 437 72.5
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 1.6e-183 646.4 432 72.2
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 2.8e-183 645.6 462 70.6
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 1.4e-182 643.3 474 67.5
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.8e-182 642.9 437 71.4
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 2.3e-182 642.5 434 71.4
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 5.2e-182 641.3 431 72.4
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 6.8e-182 641.0 437 71.9
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.2e-181 640.2 437 71.9
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.9e-179 632.9 432 71.1
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 2.4e-179 632.5 430 71.9
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 3.2e-179 632.1 430 72.1
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 3.2e-179 632.1 437 70.7
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 9.2e-179 630.6 430 71.9
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 4.6e-178 628.2 430 71.6
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 8.6e-177 624.0 448 70.5
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.1e-176 623.6 433 70.7
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 1.1e-176 623.6 430 71.4
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.9e-176 622.9 432 70.4
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 1.9e-176 622.9 432 71.3
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 9.5e-176 620.5 434 71.7
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 2.8e-175 619.0 426 70.4
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 2.8e-175 619.0 441 71.2
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 3.6e-175 618.6 430 71.2
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.1e-174 617.1 517 61.1
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 3.1e-174 615.5 440 69.8
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 1.5e-173 613.2 416 71.4
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 2.9e-172 609.0 454 70.7
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 6.4e-172 607.8 434 67.5
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 1.4e-171 606.7 437 69.3
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 7.1e-171 604.4 374 78.3
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 6.0e-170 601.3 524 59.7
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 3.9e-169 598.6 432 67.1
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 6.6e-169 597.8 482 63.3
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 1.1e-168 597.0 472 64.4
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.9e-168 596.3 429 67.4
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 4.3e-168 595.1 300 99.7
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 3.6e-167 592.0 416 69.5
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 4.7e-167 591.7 433 68.4
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 9.0e-166 587.4 433 67.7
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 3.4e-165 585.5 481 63.0
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 4.2e-163 578.6 436 65.8
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 7.8e-162 574.3 421 68.2
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.0e-161 573.9 446 64.3
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.0e-161 572.4 440 66.6
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 5.1e-161 571.6 437 66.1
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.9e-160 569.7 382 74.9
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 4.8e-159 565.1 438 65.1
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 3.1e-158 562.4 379 72.0
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.7e-156 556.6 380 71.6
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 1.7e-156 556.6 376 72.9
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 6.4e-156 554.7 426 67.8
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.2e-155 552.0 380 71.1
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 2.7e-154 549.3 728 44.6
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 3.2e-147 525.8 362 71.8
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 1.7e-140 503.4 698 43.4
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 1.2e-138 497.3 435 59.8
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 5.9e-133 478.4 434 56.0
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.1e-126 457.6 321 69.8
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 4.1e-126 455.7 443 52.8
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 5.3e-126 455.3 432 52.1
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 1.1e-120 437.6 339 65.8
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 3.1e-118 429.5 295 71.2
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 1.9e-115 420.2 341 62.5
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.0e-108 397.9 436 48.9
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 2.5e-99 366.7 350 53.7
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 3.4e-96 356.3 223 78.5
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 5.5e-91 339.0 219 76.3
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.3e-87 327.8 250 66.4
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 2.4e-78 297.0 161 91.3
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 1.6e-74 284.3 237 65.0
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 7.1e-70 268.9 283 53.7
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 5.6e-67 259.2 215 63.3
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 7.3e-67 258.8 429 35.4
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.1e-66 257.3 440 38.6
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.7e-60 237.7 140 82.1
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.5e-59 234.6 137 79.6
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.2e-55 220.7 159 67.9
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 7.1e-54 215.7 142 73.2
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 9.3e-54 215.3 134 79.1
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 1.3e-42 178.3 320 35.6
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.6e-40 170.6 149 53.7
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 3.0e-36 157.1 200 48.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 8.7e-36 155.6 193 49.2
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.8e-28 131.3 135 49.6
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 8.2e-26 122.5 146 51.4
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 2.9e-23 114.0 94 57.4
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 7.4e-19 99.4 55 80.0
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 1.6e-18 98.2 100 47.0
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 4.1e-17 93.6 75 61.3
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 1.5e-16 91.7 75 61.3
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 1.0e-15 89.0 75 60.0
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.1e-13 81.3 85 43.5
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 5.7e-11 73.2 43 76.7
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 7.4e-11 72.8 53 67.9
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 7.7e-08 62.8 40 65.0
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.9e-07 60.8 46 63.0
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 3.2e-06 57.4 35 74.3
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 9.4e-06 55.8 35 68.6


User provided reference genes

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