Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.1e-57 226.5 117 100.0
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.1e-57 226.5 117 100.0
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.3e-42 176.4 119 79.8
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 5.4e-41 171.0 119 74.8
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 2.3e-36 155.6 120 72.5
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 1.5e-35 152.9 121 70.2
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 5.7e-35 151.0 115 67.8
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 6.3e-34 147.5 119 68.9
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.3e-34 147.1 115 66.1
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 8.3e-34 147.1 120 68.3
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.1e-33 146.7 115 66.1
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.1e-33 146.7 119 68.9
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 1.1e-33 146.7 120 68.3
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.4e-33 146.4 115 66.1
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 2.4e-33 145.6 116 65.5
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 3.1e-33 145.2 118 65.3
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 4.1e-33 144.8 119 65.5
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.4e-33 144.4 115 65.2
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 7.0e-33 144.1 115 66.1
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 7.0e-33 144.1 118 63.6
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 7.0e-33 144.1 115 65.2
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 7.0e-33 144.1 124 66.9
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 9.2e-33 143.7 113 67.3
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 9.2e-33 143.7 100 71.0
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 1.2e-32 143.3 120 66.7
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.7e-32 142.1 118 65.3
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.7e-32 142.1 119 64.7
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 1.3e-31 139.8 113 69.0
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.7e-31 139.4 113 68.1
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 2.3e-31 139.0 117 63.2
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 2.3e-31 139.0 117 66.7
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 2.3e-31 139.0 120 61.7
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.9e-31 138.7 118 65.3
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 5.0e-31 137.9 118 61.9
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 6.6e-31 137.5 122 65.6
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 8.6e-31 137.1 117 61.5
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 8.6e-31 137.1 117 65.0
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.9e-30 136.0 121 65.3
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 2.5e-30 135.6 115 61.7
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 5.6e-30 134.4 119 63.0
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 7.3e-30 134.0 120 64.2
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 7.3e-30 134.0 121 63.6
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 7.3e-30 134.0 121 63.6
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 7.3e-30 134.0 79 81.0
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 7.3e-30 134.0 115 64.3
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 7.3e-30 134.0 117 60.7
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.5e-30 133.7 122 61.5
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 9.5e-30 133.7 120 60.8
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 9.5e-30 133.7 116 62.9
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 9.5e-30 133.7 117 60.7
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.2e-29 133.3 120 69.2
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.2e-29 133.3 117 59.8
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 1.6e-29 132.9 119 60.5
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.1e-29 132.5 117 61.5
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 2.1e-29 132.5 120 63.3
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 2.8e-29 132.1 115 60.9
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 2.8e-29 132.1 117 64.1
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.8e-29 132.1 113 60.2
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.8e-29 132.1 113 60.2
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 3.6e-29 131.7 122 58.2
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 3.6e-29 131.7 117 60.7
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 8.0e-29 130.6 118 61.0
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 2.3e-28 129.0 112 63.4
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 2.3e-28 129.0 79 75.9
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 3.0e-28 128.6 107 64.5
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 3.0e-28 128.6 116 60.3
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.0e-28 128.3 122 59.8
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 5.2e-28 127.9 121 63.6
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.5e-27 126.3 110 62.7
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.5e-27 126.3 119 60.5
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.0e-27 125.9 107 63.6
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.0e-27 125.9 120 59.2
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 2.0e-27 125.9 114 62.3
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 3.4e-27 125.2 117 59.0
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 3.4e-27 125.2 110 61.8
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 4.4e-27 124.8 110 61.8
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 7.5e-27 124.0 121 62.0
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 7.5e-27 124.0 118 61.9
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.3e-26 123.2 72 80.6
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.3e-26 123.2 115 60.0
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 2.2e-26 122.5 120 56.7
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 2.2e-26 122.5 110 60.9
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 2.9e-26 122.1 77 75.3
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 8.3e-26 120.6 127 52.0
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.1e-25 120.2 111 60.4
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.4e-25 119.8 118 56.8
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 2.4e-25 119.0 117 55.6
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 2.4e-25 119.0 153 52.9
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 3.2e-25 118.6 115 56.5
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.2e-25 118.6 144 50.0
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 5.4e-25 117.9 99 67.7
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 9.2e-25 117.1 114 59.6
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 9.2e-25 117.1 117 53.8
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.2e-24 116.7 117 56.4
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.6e-24 116.3 121 52.1
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.6e-24 116.3 122 59.8
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 2.0e-24 115.9 121 57.0
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 2.0e-24 115.9 121 57.0
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 2.0e-24 115.9 121 57.0
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 2.0e-24 115.9 117 55.6
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 3.5e-24 115.2 119 56.3
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 4.6e-24 114.8 118 55.9
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 4.6e-24 114.8 116 57.8
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 6.0e-24 114.4 116 57.8
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 6.0e-24 114.4 114 57.9
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 7.8e-24 114.0 117 56.4
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.3e-23 113.2 119 56.3
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 1.7e-23 112.8 114 55.3
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 1.7e-23 112.8 114 55.3
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.7e-23 112.8 114 56.1
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.3e-23 112.5 103 61.2
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 3.0e-23 112.1 115 54.8
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 3.0e-23 112.1 112 50.9
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.9e-23 111.7 97 63.9
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 5.0e-23 111.3 114 54.4
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 5.0e-23 111.3 114 54.4
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 5.0e-23 111.3 114 54.4
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 1.5e-22 109.8 63 79.4
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.9e-22 109.4 90 64.4
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.3e-22 108.2 72 72.2
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 1.8e-20 102.8 63 73.0
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.2e-19 100.1 111 57.7
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.5e-19 99.8 72 65.3
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.6e-19 99.0 72 63.9
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 4.4e-19 98.2 59 78.0
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 5.8e-19 97.8 74 62.2
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.7e-18 96.3 70 62.9
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.4e-17 93.2 65 69.2
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 2.4e-17 92.4 115 49.6
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.1e-17 91.7 100 52.0
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.4e-17 91.3 89 59.6
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 1.7e-15 86.3 54 72.2
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 3.9e-15 85.1 108 47.2
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 6.2e-13 77.8 71 54.9
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.3e-12 75.9 128 38.3
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 2.3e-12 75.9 47 72.3
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 4.3e-06 55.1 74 41.9


User provided reference genes

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