Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 6.4e-125 450.7 214 100.0
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 6.4e-125 450.7 214 100.0
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 9.3e-116 420.2 214 91.6
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 4.6e-115 417.9 214 91.1
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 2.3e-114 415.6 214 91.6
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 5.1e-114 414.5 218 89.9
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 4.3e-113 411.4 214 90.7
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 4.3e-113 411.4 214 90.2
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 4.3e-113 411.4 214 90.2
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 5.6e-113 411.0 214 90.2
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 7.3e-113 410.6 214 89.3
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 7.3e-113 410.6 215 90.2
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 9.6e-113 410.2 215 91.6
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 2.1e-112 409.1 214 89.7
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 2.8e-112 408.7 215 91.2
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 4.8e-112 407.9 214 89.3
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 6.2e-112 407.5 214 89.3
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 6.2e-112 407.5 213 89.2
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.1e-111 406.8 215 90.7
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 2.4e-111 405.6 214 88.8
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 3.1e-111 405.2 214 88.8
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 3.1e-111 405.2 214 88.3
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 4.0e-111 404.8 215 88.8
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 9.0e-111 403.7 218 88.5
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.5e-110 402.9 214 87.9
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 1.5e-110 402.9 214 88.8
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 2.0e-110 402.5 214 88.8
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 3.4e-110 401.7 214 87.4
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 3.4e-110 401.7 214 88.8
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 7.6e-110 400.6 216 88.4
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 2.2e-109 399.1 216 87.0
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 2.9e-109 398.7 237 81.4
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 3.8e-109 398.3 216 87.0
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.8e-109 398.3 215 87.9
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.1e-108 396.7 214 87.4
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 3.2e-108 395.2 214 86.9
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 4.2e-108 394.8 217 86.2
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 4.2e-108 394.8 214 86.0
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 5.5e-108 394.4 215 88.4
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 9.3e-108 393.7 214 85.5
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 9.3e-108 393.7 216 87.0
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 1.2e-107 393.3 216 86.1
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 2.7e-107 392.1 230 82.2
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 3.5e-107 391.7 210 86.7
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 4.6e-107 391.3 215 87.0
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 4.6e-107 391.3 215 87.4
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 7.9e-107 390.6 216 86.1
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.3e-106 389.8 214 86.0
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.3e-106 389.8 215 87.4
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.3e-106 389.8 215 87.4
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 3.9e-106 388.3 214 86.0
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 5.1e-106 387.9 215 87.0
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 1.1e-105 386.7 216 85.2
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 7.4e-105 384.0 214 85.0
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 2.8e-104 382.1 214 84.6
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 4.8e-104 381.3 224 81.7
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 8.1e-104 380.6 214 81.8
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 1.1e-103 380.2 215 83.3
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 1.4e-103 379.8 215 84.7
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.0e-103 378.3 215 84.2
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 6.9e-103 377.5 215 82.3
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 6.9e-103 377.5 215 82.3
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 6.9e-103 377.5 215 82.3
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 9.0e-103 377.1 215 82.8
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 9.0e-103 377.1 215 83.7
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 1.2e-102 376.7 215 82.3
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.5e-102 376.3 214 82.2
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.5e-102 376.3 214 83.2
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 1.5e-102 376.3 247 74.5
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.5e-102 376.3 199 86.4
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 2.6e-102 375.6 215 82.3
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 2.6e-102 375.6 215 81.4
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 1.3e-101 373.2 215 81.9
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 3.8e-101 371.7 215 83.3
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.9e-100 369.4 214 83.2
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 5.5e-100 367.9 199 86.4
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 9.3e-100 367.1 218 78.4
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 2.7e-99 365.5 215 80.0
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 3.5e-99 365.2 240 75.8
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 4.6e-99 364.8 219 80.4
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 6.0e-99 364.4 196 88.3
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 7.9e-99 364.0 188 90.4
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 5.1e-98 361.3 216 80.6
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 6.7e-98 360.9 218 77.1
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 1.5e-97 359.8 185 89.7
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 1.5e-97 359.8 188 87.8
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.9e-97 359.4 190 90.0
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 9.6e-97 357.1 211 79.6
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.3e-96 356.7 190 88.4
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 3.7e-96 355.1 189 88.9
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 4.8e-96 354.8 203 81.8
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 3.1e-95 352.1 214 78.0
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 3.1e-95 352.1 198 84.3
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.5e-94 349.7 185 88.1
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.0e-94 349.4 190 85.3
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 3.4e-94 348.6 180 88.3
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 7.6e-94 347.4 178 88.8
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 6.5e-93 344.4 198 80.3
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 4.3e-89 331.6 192 80.2
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 9.7e-89 330.5 207 75.4
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 3.1e-87 325.5 195 73.3
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 1.6e-83 313.2 195 69.7
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 3.0e-82 308.9 214 65.9
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 4.1e-79 298.5 188 69.7
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.7e-72 276.6 171 77.8
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.7e-72 276.6 171 77.8
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 6.3e-72 274.6 144 86.8
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 3.1e-71 272.3 198 64.1
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 4.1e-71 271.9 144 84.7
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 1.2e-67 260.4 132 88.6
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 6.3e-64 248.1 132 84.8
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 3.1e-63 245.7 133 85.0
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 5.2e-58 228.4 122 83.6
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 5.2e-58 228.4 129 79.1
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.7e-57 224.9 123 86.2
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 4.5e-54 215.3 158 68.4
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.2e-49 200.7 106 89.6
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.0e-38 163.3 91 82.4
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 3.0e-37 159.5 89 83.1
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 2.1e-35 153.3 86 84.9
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 2.8e-35 152.9 82 89.0
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 4.0e-26 122.5 208 34.6
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.2e-22 110.9 205 34.6
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 4.9e-16 89.0 64 68.8
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 7.1e-15 85.1 42 85.7
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 3.6e-11 72.8 64 56.2
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 4.4e-09 65.9 41 65.9
MD12G1146300 Malus domestica HOM05D000026 ORTHO05D000094 4.9e-08 62.4 75 48.0


User provided reference genes

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