Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 1.7e-105 386.0 190 100.0
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 1.7e-105 386.0 190 100.0
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.4e-102 376.3 190 95.8
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 1.8e-102 375.9 190 96.3
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.8e-102 375.9 190 95.8
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.3e-102 375.6 190 95.8
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 2.3e-102 375.6 190 95.8
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 4.0e-102 374.8 190 95.3
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 5.2e-102 374.4 189 95.8
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 6.8e-102 374.0 190 95.3
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 8.8e-102 373.6 189 94.7
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 1.2e-101 373.2 190 94.7
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.2e-101 373.2 189 95.2
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.5e-101 372.9 190 94.7
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.5e-101 372.9 190 94.2
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 2.0e-101 372.5 190 94.7
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.6e-101 372.1 190 93.7
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 2.6e-101 372.1 189 95.8
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 2.6e-101 372.1 190 94.2
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 3.4e-101 371.7 190 93.7
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 3.4e-101 371.7 189 94.7
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.4e-101 371.7 189 94.7
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.4e-101 371.7 189 94.7
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.4e-101 371.7 190 94.7
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.4e-101 371.7 190 94.7
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 4.4e-101 371.3 189 93.1
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 5.7e-101 370.9 190 93.7
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 7.5e-101 370.5 190 93.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 9.8e-101 370.2 190 94.7
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 9.8e-101 370.2 189 94.7
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 9.8e-101 370.2 189 94.2
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.3e-100 369.8 189 94.2
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 1.3e-100 369.8 188 94.1
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 1.3e-100 369.8 190 94.2
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.7e-100 369.4 189 94.2
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 2.2e-100 369.0 190 93.2
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.2e-100 369.0 188 93.1
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.2e-100 369.0 190 94.2
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 2.8e-100 368.6 190 92.6
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 6.3e-100 367.5 189 93.7
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 8.3e-100 367.1 190 93.2
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.1e-99 366.7 190 92.1
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.1e-99 366.7 190 93.2
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.4e-99 366.3 188 92.0
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.4e-99 366.3 188 93.6
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 1.4e-99 366.3 190 92.1
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.8e-99 365.9 190 92.6
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 2.4e-99 365.5 190 93.7
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 7.0e-99 364.0 190 91.1
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.2e-98 363.2 189 92.1
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.6e-98 362.8 190 93.2
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.6e-98 362.8 190 92.6
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 1.6e-98 362.8 190 90.5
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.6e-98 362.8 190 90.0
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 3.5e-98 361.7 189 91.5
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 3.5e-98 361.7 190 92.1
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 4.5e-98 361.3 189 91.5
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 5.9e-98 360.9 195 90.8
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 5.9e-98 360.9 190 91.6
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 5.9e-98 360.9 190 91.6
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 5.9e-98 360.9 190 91.6
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.3e-97 359.8 210 84.8
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.3e-97 359.8 188 92.0
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.7e-97 359.4 197 88.8
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 2.3e-97 359.0 190 90.0
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 2.3e-97 359.0 216 82.9
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 8.6e-97 357.1 190 89.5
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 8.6e-97 357.1 189 91.0
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.1e-96 356.7 190 88.9
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.1e-96 356.7 190 89.5
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.9e-96 355.9 188 90.4
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 2.5e-96 355.5 190 88.9
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 3.3e-96 355.1 201 86.6
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 4.2e-96 354.8 190 88.4
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 7.2e-96 354.0 189 89.9
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 7.2e-96 354.0 201 86.6
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 9.5e-96 353.6 190 88.4
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 9.5e-96 353.6 188 91.5
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 2.1e-95 352.4 214 82.2
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 4.7e-95 351.3 231 77.9
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 6.1e-95 350.9 189 87.8
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 8.0e-95 350.5 190 87.4
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.0e-94 350.1 183 91.8
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 1.0e-94 350.1 188 87.8
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 1.8e-94 349.4 190 86.8
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 5.2e-94 347.8 190 85.8
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.2e-93 346.7 188 86.7
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 1.5e-93 346.3 188 86.7
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 3.4e-93 345.1 188 86.2
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 4.4e-93 344.7 188 86.2
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 4.4e-93 344.7 193 87.6
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 5.7e-93 344.4 188 85.6
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.7e-92 342.8 189 83.6
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 3.7e-92 341.7 188 86.2
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.4e-91 339.7 190 81.6
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 1.2e-90 336.7 189 82.5
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.0e-89 331.3 181 89.5
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.0e-89 331.3 181 89.5
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 6.6e-89 330.9 189 79.4
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 8.6e-89 330.5 189 79.9
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 1.1e-88 330.1 190 78.9
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 1.2e-87 326.6 172 90.7
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 2.8e-87 325.5 172 88.4
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.8e-86 322.8 190 76.8
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 6.8e-86 320.9 190 81.1
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 7.5e-85 317.4 167 92.2
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 4.9e-84 314.7 158 94.9
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.4e-83 313.2 188 75.0
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.2e-83 312.0 188 75.5
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 7.8e-82 307.4 158 91.8
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 2.1e-79 299.3 158 89.9
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 1.1e-78 297.0 161 90.7
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 3.0e-73 278.9 171 80.1
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 2.1e-71 272.7 206 68.9
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.2e-66 256.9 188 66.0
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 1.3e-65 253.4 140 87.9
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.7e-63 245.0 188 63.3
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.1e-59 231.1 183 60.7
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.1e-56 223.8 206 52.9
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.5e-56 222.6 113 92.0
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 9.6e-56 220.7 149 72.5
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 2.8e-55 219.2 129 86.0
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.9e-52 209.1 158 66.5
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 4.9e-52 208.4 109 91.7
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 1.4e-51 206.8 112 87.5
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 4.2e-51 205.3 109 90.8
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 7.1e-51 204.5 106 87.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 5.1e-49 198.4 109 88.1
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 2.5e-40 169.5 81 97.5
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 7.4e-40 167.9 81 96.3
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 1.6e-39 166.8 81 95.1
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 8.1e-39 164.5 80 96.2
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 3.4e-37 159.1 84 92.9
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 5.8e-37 158.3 81 88.9
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 2.1e-34 149.8 80 88.8
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 7.9e-34 147.9 73 93.2
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.8e-33 146.7 155 47.1
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 7.4e-32 141.4 70 94.3
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 4.8e-31 138.7 70 88.6
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 5.9e-29 131.7 84 81.0
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.2e-26 124.0 68 83.8
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 6.1e-26 121.7 68 82.4
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 6.1e-26 121.7 68 82.4
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 3.2e-19 99.4 51 86.3
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 2.7e-18 96.3 47 91.5
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 8.5e-12 74.7 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 8.5e-12 74.7 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 8.5e-12 74.7 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 8.5e-12 74.7 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 1.1e-11 74.3 37 89.2


User provided reference genes

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