Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 9.4e-116 420.2 217 100.0
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 9.4e-116 420.2 217 100.0
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 1.5e-52 210.3 183 63.9
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 4.3e-52 208.8 183 63.9
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 4.9e-48 195.3 186 59.1
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 9.3e-47 191.0 182 61.5
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 1.9e-31 140.2 215 45.1
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 2.1e-30 136.7 183 48.6
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 3.0e-29 132.9 217 44.2
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.0e-29 132.9 217 44.2
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.9e-29 132.5 216 44.0
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 5.1e-29 132.1 216 44.0
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 1.1e-28 131.0 166 47.0
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 1.5e-28 130.6 178 47.2
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 1.9e-28 130.2 180 47.2
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 2.5e-28 129.8 175 46.3
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.3e-28 129.4 216 43.5
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.3e-28 129.4 182 45.1
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 7.4e-28 128.3 216 43.5
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 1.6e-27 127.1 176 48.3
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 2.1e-27 126.7 183 45.4
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 6.3e-27 125.2 184 44.6
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 8.2e-27 124.8 176 42.6
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 2.4e-26 123.2 215 43.3
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 5.3e-26 122.1 174 43.1
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 5.3e-26 122.1 215 39.5
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 5.3e-26 122.1 215 40.0
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 1.2e-25 120.9 187 38.5
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 2.6e-25 119.8 175 44.0
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 3.4e-25 119.4 179 43.6
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.1e-23 114.4 175 43.4
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 5.5e-23 112.1 178 44.9
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 1.6e-22 110.5 179 43.0
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 1.8e-21 107.1 174 43.1
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.3e-20 102.8 163 41.1
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 1.6e-19 100.5 139 46.8
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 2.2e-19 100.1 104 53.8
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 2.2e-19 100.1 114 52.6
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 2.8e-19 99.8 119 52.1
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 8.2e-19 98.2 185 40.5
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 8.2e-19 98.2 173 41.6
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.4e-18 97.4 110 53.6
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.8e-18 97.1 110 53.6
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 2.4e-18 96.7 181 38.1
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 1.5e-17 94.0 123 45.5
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 1.5e-17 94.0 119 46.2
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 1.5e-17 94.0 107 52.3
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 2.0e-17 93.6 192 35.4
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 2.6e-17 93.2 140 42.1
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 3.4e-17 92.8 122 50.0
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 7.7e-17 91.7 99 58.6
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 1.3e-16 90.9 177 40.1
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 1.3e-16 90.9 106 50.0
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 1.3e-16 90.9 105 46.7
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 1.7e-16 90.5 106 48.1
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 2.2e-16 90.1 97 46.4
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 2.9e-16 89.7 108 50.9
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 6.5e-16 88.6 106 47.2
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 6.5e-16 88.6 105 45.7
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.1e-15 87.8 108 46.3
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.1e-15 87.8 108 46.3
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 2.5e-15 86.7 123 41.5
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 4.2e-15 85.9 170 38.8
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 3.6e-14 82.8 155 37.4
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 6.1e-14 82.0 156 35.3
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 5.1e-13 79.0 134 41.8
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 5.1e-13 79.0 105 43.8
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 2.0e-12 77.0 108 41.7
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 5.7e-12 75.5 108 41.7
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 9.7e-12 74.7 81 53.1
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 1.7e-11 73.9 115 44.3
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 3.7e-11 72.8 108 38.9
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 4.8e-11 72.4 108 38.0
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 4.8e-11 72.4 108 38.0
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 4.8e-11 72.4 96 44.8
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 6.3e-11 72.0 108 39.8
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 6.3e-11 72.0 94 42.6
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 6.3e-11 72.0 54 64.8
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.1e-10 71.2 108 37.0
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 1.1e-10 71.2 113 42.5
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 1.1e-10 71.2 117 38.5
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 1.4e-10 70.9 175 32.6
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 1.8e-10 70.5 108 38.0
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.8e-10 70.5 112 39.3
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 2.4e-10 70.1 155 36.1
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 2.4e-10 70.1 95 44.2
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 2.4e-10 70.1 144 38.9
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 2.4e-10 70.1 117 38.5
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 3.1e-10 69.7 108 37.0
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 3.1e-10 69.7 115 41.7
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 4.1e-10 69.3 131 36.6
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 4.1e-10 69.3 98 43.9
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 6.9e-10 68.6 108 38.0
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 6.9e-10 68.6 108 38.0
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 6.9e-10 68.6 111 38.7
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 6.9e-10 68.6 111 38.7
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 6.9e-10 68.6 111 38.7
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 6.9e-10 68.6 117 39.3
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 9.1e-10 68.2 111 38.7
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 1.2e-09 67.8 115 38.3
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.5e-09 67.4 111 40.5
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 1.5e-09 67.4 97 42.3
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.5e-09 67.4 118 39.8
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 1.5e-09 67.4 105 46.7
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 1.5e-09 67.4 101 38.6
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 2.0e-09 67.0 117 38.5
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 2.0e-09 67.0 108 37.0
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 2.0e-09 67.0 117 38.5
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 2.0e-09 67.0 108 37.0
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 2.0e-09 67.0 122 37.7
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 2.6e-09 66.6 111 37.8
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 4.5e-09 65.9 97 38.1
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 4.5e-09 65.9 116 37.9
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 1.0e-08 64.7 116 37.9
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 1.0e-08 64.7 116 37.9
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 2.2e-08 63.5 115 37.4
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 2.9e-08 63.2 110 39.1
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 3.8e-08 62.8 137 34.3
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 8.5e-08 61.6 115 38.3
Duzib248G0964 Durio zibethinus HOM05D003662 ORTHO05D001824 8.5e-08 61.6 151 33.8
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 8.5e-08 61.6 89 41.6
Oeu026157.1 Olea europaea HOM05D003662 ORTHO05D001824 8.5e-08 61.6 113 38.1
MSTRG.27792 Avicennia marina HOM05D003662 ORTHO05D001824 1.4e-07 60.8 115 40.0
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 1.4e-07 60.8 115 38.3
Hund00056 Selenicereus undatus HOM05D003662 ORTHO05D001824 1.9e-07 60.5 139 32.4
Lsat_1_v5_gn_1_114861 Lactuca sativa HOM05D004414 ORTHO05D001824 3.2e-07 59.7 115 35.7
THA.LOC104799974 Tarenaya hassleriana HOM05D003662 ORTHO05D001824 3.2e-07 59.7 126 34.1
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 4.2e-07 59.3 103 37.9
DCAR_021854 Daucus carota HOM05D003662 ORTHO05D001824 4.2e-07 59.3 98 36.7
PSO447G0309 Papaver somniferum HOM05D003662 ORTHO05D001824 4.2e-07 59.3 96 35.4
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 4.2e-07 59.3 40 72.5
AagrBONN_evm.TU.Sc2ySwM_344.4535 Anthoceros agrestis HOM05D004414 ORTHO05D001824 5.5e-07 58.9 118 37.3
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 7.2e-07 58.5 93 40.9
Lj6g0024827 Lotus japonicus HOM05D003662 ORTHO05D001824 7.2e-07 58.5 105 34.3
Actinidia06255 Actinidia chinensis HOM05D004414 ORTHO05D001824 9.4e-07 58.2 178 27.5
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 9.4e-07 58.2 112 36.6
PSO541G6545 Papaver somniferum HOM05D003662 ORTHO05D001824 9.4e-07 58.2 128 35.9
Zm00001eb392400 Zea mays HOM05D003662 ORTHO05D001824 9.4e-07 58.2 124 31.5
Glyma.15G053000 Glycine max HOM05D003662 ORTHO05D001824 1.2e-06 57.8 144 30.6
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 1.2e-06 57.8 92 38.0
Manes.06G010600 Manihot esculenta HOM05D003662 ORTHO05D001824 1.2e-06 57.8 146 32.2
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 1.6e-06 57.4 95 36.8
Oeu007958.1 Olea europaea HOM05D003662 ORTHO05D001824 1.6e-06 57.4 146 31.5
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 2.1e-06 57.0 134 32.8
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 2.1e-06 57.0 151 32.5
Solyc01g105120.4 Solanum lycopersicum HOM05D003662 ORTHO05D001824 2.1e-06 57.0 126 35.7
Migut.B00615 Erythranthe guttata HOM05D003662 ORTHO05D001824 2.7e-06 56.6 110 36.4
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 2.7e-06 56.6 113 38.9
SalBow6G1900 Salvia bowleyana HOM05D003662 ORTHO05D001824 2.7e-06 56.6 116 34.5
SalBow6G5751 Salvia bowleyana HOM05D003662 ORTHO05D001824 2.7e-06 56.6 116 34.5
PGSC0003DMG400012562 Solanum tuberosum HOM05D003662 ORTHO05D001824 2.7e-06 56.6 121 36.4
BolC3t12886H Brassica oleracea HOM05D008873 ORTHO05D005982 3.6e-06 56.2 85 43.5
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 3.6e-06 56.2 141 31.9
CDE12G0772 Ceratophyllum demersum HOM05D003662 ORTHO05D001824 3.6e-06 56.2 108 36.1
SEGI_13704 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 3.6e-06 56.2 128 30.5
Sopen01g047650 Solanum pennellii HOM05D003662 ORTHO05D001824 3.6e-06 56.2 126 35.7
SGA_v2.0_scaffold83G26297 Striga asiatica HOM05D003662 ORTHO05D001824 3.6e-06 56.2 103 34.0
Actinidia00263 Actinidia chinensis HOM05D003662 ORTHO05D001824 4.7e-06 55.8 105 36.2
CSS0002395 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 4.7e-06 55.8 132 34.1
Eucgr.G03246 Eucalyptus grandis HOM05D004414 ORTHO05D001824 4.7e-06 55.8 95 35.8
Nn1g05340 Nelumbo nucifera HOM05D003662 ORTHO05D001824 4.7e-06 55.8 146 32.2
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 4.7e-06 55.8 113 38.1
Sp2g27230 Schrenkiella parvula HOM05D003662 ORTHO05D001824 4.7e-06 55.8 102 35.3
Hund06389 Selenicereus undatus HOM05D003662 ORTHO05D001824 6.1e-06 55.5 127 32.3
Sc10g0004350 Simmondsia chinensis HOM05D004414 ORTHO05D001824 6.1e-06 55.5 127 29.9
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 6.1e-06 55.5 126 31.0
CDE03G0404 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 7.9e-06 55.1 100 36.0
Cc00_g16250 Coffea canephora HOM05D004414 ORTHO05D001824 7.9e-06 55.1 179 27.4
HanXRQChr10g0295841 Helianthus annuus HOM05D003662 ORTHO05D001824 7.9e-06 55.1 109 30.3
Mapoly0169s0020 Marchantia polymorpha HOM05D003662 ORTHO05D001824 7.9e-06 55.1 93 36.6
Thecc.02G139400 Theobroma cacao HOM05D003662 ORTHO05D001824 7.9e-06 55.1 133 32.3
TAR376G0165 Trochodendron aralioides HOM05D003662 ORTHO05D001824 7.9e-06 55.1 135 31.9


User provided reference genes

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