Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 2.1e-219 765.4 374 100.0
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 1.3e-165 586.6 308 89.3
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 1.5e-161 573.2 304 88.2
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 3.3e-161 572.0 300 90.7
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 4.4e-161 571.6 306 87.9
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 6.3e-160 567.8 303 88.8
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 6.3e-160 567.8 306 87.3
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 1.1e-159 567.0 302 88.1
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 1.4e-159 566.6 331 82.5
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 1.4e-159 566.6 306 86.9
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 5.3e-159 564.7 306 86.9
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 1.2e-158 563.5 303 88.1
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 2.0e-158 562.8 304 87.8
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 2.0e-158 562.8 305 85.9
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 7.7e-158 560.8 305 87.5
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 1.3e-157 560.1 304 87.8
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 1.7e-157 559.7 306 86.3
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 1.7e-157 559.7 306 85.6
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 3.8e-157 558.5 306 85.6
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 6.5e-157 557.8 303 86.1
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 8.5e-157 557.4 303 86.5
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 1.1e-156 557.0 303 85.8
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 1.4e-156 556.6 303 89.1
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 1.4e-156 556.6 306 85.6
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 1.9e-156 556.2 302 85.8
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 2.5e-156 555.8 306 85.0
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 4.2e-156 555.1 306 86.6
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 5.5e-156 554.7 306 85.3
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 5.5e-156 554.7 303 85.8
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 1.2e-155 553.5 303 85.1
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 1.6e-155 553.1 304 85.2
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 2.7e-155 552.4 305 84.6
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.7e-155 552.4 302 85.4
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 3.6e-155 552.0 302 85.4
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 6.1e-155 551.2 348 76.7
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 6.1e-155 551.2 302 85.4
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 1.0e-154 550.4 306 86.6
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 1.4e-154 550.1 305 83.9
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 1.4e-154 550.1 305 83.3
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 2.3e-154 549.3 305 84.6
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 6.7e-154 547.7 305 83.0
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 1.1e-153 547.0 302 83.4
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 2.0e-153 546.2 308 82.5
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 3.3e-153 545.4 304 83.9
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 7.4e-153 544.3 318 81.1
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 1.3e-152 543.5 318 80.8
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 1.3e-152 543.5 318 79.9
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 1.7e-152 543.1 307 82.7
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 1.7e-152 543.1 302 83.8
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 2.2e-152 542.7 313 80.8
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 2.2e-152 542.7 317 81.1
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 2.2e-152 542.7 306 83.0
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 2.8e-152 542.3 305 83.3
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 2.8e-152 542.3 318 80.8
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 3.7e-152 542.0 306 81.0
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 3.7e-152 542.0 303 83.5
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 1.1e-151 540.4 303 82.8
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 1.1e-151 540.4 324 80.2
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 2.4e-151 539.3 300 83.3
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 2.4e-151 539.3 299 84.3
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 3.1e-151 538.9 332 76.8
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 4.1e-151 538.5 334 77.5
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 4.1e-151 538.5 383 70.5
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 4.1e-151 538.5 313 81.2
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 5.3e-151 538.1 300 83.3
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 7.0e-151 537.7 299 84.3
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 2.0e-150 536.2 334 76.9
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 2.0e-150 536.2 302 81.1
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 2.6e-150 535.8 334 76.9
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 2.6e-150 535.8 300 83.7
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 5.9e-150 534.6 334 76.6
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.7e-149 533.1 302 83.8
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 1.7e-149 533.1 304 82.6
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 5.0e-149 531.6 305 82.3
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 6.1e-147 524.6 303 79.5
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 2.6e-145 519.2 310 80.3
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 1.2e-142 510.4 334 73.1
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 2.0e-142 509.6 302 78.5
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 7.7e-142 507.7 297 80.1
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.1e-140 503.8 311 78.1
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 4.2e-140 501.9 309 78.6
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 4.2e-140 501.9 271 87.8
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 1.8e-138 496.5 295 80.0
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 4.8e-136 488.4 284 79.2
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 1.1e-135 487.3 300 75.3
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 9.1e-135 484.2 269 85.9
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 2.7e-134 482.6 308 71.1
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 4.5e-134 481.9 269 85.5
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 6.6e-133 478.0 269 85.5
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 1.5e-132 476.9 271 82.3
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 5.5e-132 474.9 251 86.1
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 1.6e-131 473.4 271 82.3
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.6e-131 472.2 257 86.4
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 1.8e-130 469.9 303 75.2
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 9.8e-129 464.2 306 74.2
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 9.2e-127 457.6 254 84.3
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 1.0e-125 454.1 301 68.1
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 9.5e-124 447.6 295 69.8
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 7.0e-119 431.4 304 71.7
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 6.0e-118 428.3 275 74.9
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 2.1e-115 419.9 258 78.7
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 8.0e-115 417.9 284 68.3
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 2.4e-111 406.4 234 81.6
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 3.0e-109 399.4 218 85.8
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 2.2e-104 383.3 304 58.9
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 6.2e-99 365.2 210 81.0
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 4.4e-97 359.0 302 57.3
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 4.2e-87 325.9 295 53.9
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 9.0e-82 308.1 317 49.5
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.4e-79 300.8 204 68.6
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 1.9e-76 290.4 186 76.3
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 1.9e-76 290.4 288 47.2
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 9.6e-76 288.1 182 74.2
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.7e-72 277.3 290 50.3
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 8.7e-69 265.0 145 83.4
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 3.3e-68 263.1 165 74.5
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 4.2e-63 246.1 157 76.4
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 8.7e-61 238.4 187 63.1
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 5.9e-57 225.7 182 63.2
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.5e-55 220.3 120 84.2
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 1.0e-53 214.9 118 81.4
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 1.4e-53 214.5 119 81.5
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 8.8e-53 211.8 135 72.6
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 7.7e-49 198.7 108 86.1
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.0e-45 188.3 97 90.7
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 5.7e-44 182.6 124 71.8
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 9.1e-42 175.3 118 70.3
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 1.7e-40 171.0 172 54.7
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 7.2e-39 165.6 107 72.0
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.1e-34 151.8 322 34.2
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 8.5e-32 142.1 120 64.2
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.2e-30 138.3 296 35.1
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.3e-27 125.6 96 63.5
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 1.5e-23 114.8 303 31.0
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 8.8e-21 105.5 69 72.5
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 4.4e-20 103.2 109 52.3
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 5.7e-20 102.8 69 71.0
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 7.5e-20 102.4 58 82.8
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 3.1e-18 97.1 95 51.6
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 1.0e-13 82.0 55 69.1
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 2.3e-13 80.9 42 88.1
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 2.3e-13 80.9 42 88.1
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 3.0e-13 80.5 290 27.9
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 5.2e-13 79.7 42 85.7
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 6.8e-13 79.3 165 29.7
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 8.9e-13 79.0 52 69.2
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 9.8e-12 75.5 283 26.9
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 3.7e-11 73.6 294 26.9
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 4.9e-11 73.2 281 29.2
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 5.4e-10 69.7 212 28.8
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.6e-09 68.2 287 25.1
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 2.0e-09 67.8 310 26.8
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 2.0e-09 67.8 293 25.6
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.5e-09 67.0 286 24.8
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.5e-09 67.0 286 24.8
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.9e-09 66.2 287 25.4
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.3e-08 65.1 286 24.5
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-08 64.7 287 25.4
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-08 64.7 287 25.4
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 2.3e-08 64.3 286 24.5
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 2.3e-08 64.3 287 25.1
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 3.9e-08 63.5 81 43.2
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 5.0e-08 63.2 285 24.9
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.6e-08 62.8 287 25.1
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.1e-07 62.0 241 26.6
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 1.5e-07 61.6 66 50.0
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.3e-07 60.1 250 26.8
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 4.3e-07 60.1 215 27.0
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 5.6e-07 59.7 215 27.4
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 9.5e-07 58.9 121 34.7
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 9.5e-07 58.9 214 24.8


User provided reference genes

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