Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p026949 Quercus lobata HOM05D006473 ORTHO05D008108 1.3e-89 333.2 189 100.0
QL07p027003 Quercus lobata HOM05D006473 ORTHO05D008108 1.3e-81 306.6 189 94.2
QL07p025679 Quercus lobata HOM05D006473 ORTHO05D008108 2.3e-81 305.8 189 94.2
QL10p019398 Quercus lobata HOM05D006473 ORTHO05D008108 7.3e-72 274.2 194 85.1
QL09p045725 Quercus lobata HOM05D006473 ORTHO05D008108 9.8e-61 237.3 152 94.7
QL07p026979 Quercus lobata HOM05D006473 ORTHO05D008108 1.1e-59 233.8 154 93.5
CiPaw.03G109100 Carya illinoinensis HOM05D006473 ORTHO05D008108 8.4e-44 181.0 191 59.2
Cfa023365 Carpinus fangiana HOM05D006473 ORTHO05D008108 1.8e-38 163.3 188 58.0
Haze_13544 Corylus avellana HOM05D006473 ORTHO05D008108 4.9e-36 155.2 186 54.8
CiPaw.04G072200 Carya illinoinensis HOM05D006473 ORTHO05D008108 1.9e-35 153.3 195 55.9
Prupe.3G184300 Prunus persica HOM05D006473 ORTHO05D008108 9.3e-35 151.0 182 57.7
Thecc.01G174700 Theobroma cacao HOM05D006473 ORTHO05D008108 1.6e-34 150.2 182 50.5
RcHm_v2.0_Chr2g0153221 Rosa chinensis HOM05D006473 ORTHO05D008108 3.5e-34 149.1 190 50.0
FAN05G1961 Fragaria x ananassa HOM05D006473 ORTHO05D008108 6.0e-34 148.3 191 49.7
COL.COLO4_19989 Corchorus olitorius HOM05D006473 ORTHO05D008108 7.8e-34 147.9 184 56.5
QL04p064817 Quercus lobata HOM05D006473 ORTHO05D008108 1.3e-33 147.1 175 53.7
TWI34G1686 Tripterygium wilfordii HOM05D006473 ORTHO05D008108 6.6e-33 144.8 186 58.1
FvH4_6g39300 Fragaria vesca HOM05D006473 ORTHO05D008108 7.3e-32 141.4 188 47.9
Duzib138G0874 Durio zibethinus HOM05D006473 ORTHO05D008108 4.8e-31 138.7 181 50.8
QL04p064939 Quercus lobata HOM05D006473 ORTHO05D008108 6.2e-31 138.3 176 52.8
Sabra06G0006200 Salix brachista HOM05D006473 ORTHO05D008108 1.1e-30 137.5 189 49.7
FAN09G0937 Fragaria x ananassa HOM05D006473 ORTHO05D008108 3.1e-30 136.0 198 47.0
FAN14G2613 Fragaria x ananassa HOM05D006473 ORTHO05D008108 3.1e-30 136.0 198 47.0
MELO3C026363.2 Cucumis melo HOM05D006473 ORTHO05D008108 5.3e-30 135.2 181 46.4
Gohir.D11G162300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 5.3e-30 135.2 188 47.3
COL.COLO4_18222 Corchorus olitorius HOM05D006473 ORTHO05D008108 6.9e-30 134.8 183 53.0
Gorai.007G172600 Gossypium raimondii HOM05D006473 ORTHO05D008108 6.9e-30 134.8 188 46.8
Gohir.A11G155300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 9.0e-30 134.4 188 46.8
CsaV3_4G032520 Cucumis sativus L. HOM05D006473 ORTHO05D008108 2.6e-29 132.9 182 45.1
Lj6g0005292 Lotus japonicus HOM05D006473 ORTHO05D008108 1.3e-28 130.6 181 47.0
MD17G1129800 Malus domestica HOM05D006473 ORTHO05D008108 1.7e-28 130.2 201 48.3
ClCG11G016910 Citrullus lanatus HOM05D006473 ORTHO05D008108 2.9e-28 129.4 183 47.5
Potri.006G008000 Populus trichocarpa HOM05D006473 ORTHO05D008108 3.8e-28 129.0 187 47.6
MD09G1143500 Malus domestica HOM05D006473 ORTHO05D008108 6.4e-28 128.3 179 49.7
Sabra16G0000300 Salix brachista HOM05D006473 ORTHO05D008108 4.2e-27 125.6 197 44.2
Manes.08G068100 Manihot esculenta HOM05D006473 ORTHO05D008108 4.6e-26 122.1 174 56.9
Sed0014549 Sechium edule HOM05D006473 ORTHO05D008108 4.6e-26 122.1 176 46.0
Sed0027280 Sechium edule HOM05D006473 ORTHO05D008108 4.6e-26 122.1 182 45.6
CANSAT64G1482 Cannabis sativa HOM05D006473 ORTHO05D008108 6.0e-26 121.7 178 48.3
Haze_13545 Corylus avellana HOM05D006473 ORTHO05D008108 6.0e-26 121.7 143 55.2
Medtr3g082070 Medicago truncatula HOM05D006473 ORTHO05D008108 2.3e-25 119.8 190 44.7
Phvul.007G120134 Phaseolus vulgaris HOM05D006473 ORTHO05D008108 2.3e-25 119.8 176 45.5
TPR.G17559 Trifolium pratense HOM05D006473 ORTHO05D008108 5.1e-25 118.6 188 43.6
arahy.Tifrunner.gnm1.ann1.ITU10B Arachis hypogaea HOM05D006473 ORTHO05D008108 6.7e-25 118.2 174 45.4
Glyma.13G004200 Glycine max HOM05D006473 ORTHO05D008108 1.5e-24 117.1 184 45.1
Psat5g106240 Pisum sativum HOM05D006473 ORTHO05D008108 2.1e-23 113.2 196 41.8
Ciclev10012907m.g Citrus clementina HOM05D006473 ORTHO05D008108 6.2e-23 111.7 167 46.7
arahy.Tifrunner.gnm1.ann1.UN21ID Arachis hypogaea HOM05D006473 ORTHO05D008108 3.1e-22 109.4 178 43.3
PGR031G0759 Punica granatum HOM05D006473 ORTHO05D008108 3.1e-22 109.4 189 41.3
Sp7g13370 Schrenkiella parvula HOM05D006473 ORTHO05D008108 3.1e-22 109.4 180 45.0
Glyma.20G063000 Glycine max HOM05D006473 ORTHO05D008108 4.0e-22 109.0 185 42.7
Lalb_Chr17g0337141 Lupinus albus HOM05D006473 ORTHO05D008108 5.8e-21 105.1 179 39.7
TAR626G1390 Trochodendron aralioides HOM05D006473 ORTHO05D008108 1.3e-20 104.0 172 43.0
VMungo0540G0033 Vigna mungo HOM05D006473 ORTHO05D008108 6.4e-20 101.7 168 44.6
TAR626G1015 Trochodendron aralioides HOM05D006473 ORTHO05D008108 8.4e-20 101.3 171 42.7
GSVIVG01015888001 Vitis vinifera HOM05D006473 ORTHO05D008108 1.1e-19 100.9 158 50.6
CARHR221880 Cardamine hirsuta HOM05D006473 ORTHO05D008108 1.9e-19 100.1 181 41.4
Atru.chr8.1011 Acer truncatum HOM05D006473 ORTHO05D008108 3.2e-19 99.4 180 46.7
Cpa.g.sc8.265 Carica papaya HOM05D006473 ORTHO05D008108 1.2e-18 97.4 187 40.6
BraA05t20604Z Brassica rapa HOM05D006473 ORTHO05D008108 1.6e-18 97.1 175 41.7
Eucgr.A00949 Eucalyptus grandis HOM05D006473 ORTHO05D008108 2.1e-18 96.7 178 41.0
BcaC07g37876 Brassica carinata HOM05D006473 ORTHO05D008108 3.5e-18 95.9 182 41.8
A08p11670 Brassica napus HOM05D006473 ORTHO05D008108 3.5e-18 95.9 179 42.5
BolC8t48269H Brassica oleracea HOM05D006473 ORTHO05D008108 3.5e-18 95.9 182 41.8
BraA08t33161Z Brassica rapa HOM05D006473 ORTHO05D008108 3.5e-18 95.9 179 42.5
A05p16970 Brassica napus HOM05D006473 ORTHO05D008108 4.6e-18 95.5 175 41.1
Nn7g38339 Nelumbo nucifera HOM05D006473 ORTHO05D008108 6.0e-18 95.1 175 37.1
Ca_16320_v3 Cicer arietinum L. HOM05D006473 ORTHO05D008108 7.9e-18 94.7 163 42.3
BcaB04g18284 Brassica carinata HOM05D006473 ORTHO05D008108 1.0e-17 94.4 182 41.8
AT4G15140 Arabidopsis thaliana HOM05D006473 ORTHO05D008108 2.3e-17 93.2 174 47.7
Carub.0007s2685 Capsella rubella HOM05D006473 ORTHO05D008108 2.3e-17 93.2 180 44.4
BcaB02g07838 Brassica carinata HOM05D006473 ORTHO05D008108 5.1e-17 92.0 182 39.6
THA.LOC104808506 Tarenaya hassleriana HOM05D006473 ORTHO05D008108 8.7e-17 91.3 180 39.4
C06p16570 Brassica napus HOM05D006473 ORTHO05D008108 1.5e-16 90.5 175 40.0
BolC6t36859H Brassica oleracea HOM05D006473 ORTHO05D008108 1.5e-16 90.5 175 40.0
Peaxi162Scf00322g00416 Petunia axillaris HOM05D006473 ORTHO05D008108 1.5e-16 90.5 172 39.5
QL05p058452 Quercus lobata HOM05D000045 ORTHO05D000611 1.5e-16 90.5 101 51.5
BcaC08g44251 Brassica carinata HOM05D006473 ORTHO05D008108 1.9e-16 90.1 175 40.0
Peaxi162Scf00393g01011 Petunia axillaris HOM05D006473 ORTHO05D008108 3.3e-16 89.4 170 38.8
Thhalv10027487m.g Eutrema salsugineum HOM05D006473 ORTHO05D008108 4.3e-16 89.0 181 44.8
AL7G40560 Arabidopsis lyrata HOM05D006473 ORTHO05D008108 5.6e-16 88.6 163 49.7
Aa31LG9G2250 Aethionema arabicum HOM05D006473 ORTHO05D008108 9.6e-16 87.8 171 49.7
Sopen07g022630 Solanum pennellii HOM05D006473 ORTHO05D008108 9.6e-16 87.8 172 37.2
Solyc07g043070.3 Solanum lycopersicum HOM05D006473 ORTHO05D008108 1.6e-15 87.0 172 37.2
CAN.G529.20 Capsicum annuum HOM05D006473 ORTHO05D008108 3.7e-15 85.9 165 37.0
Nitab4.5_0002292g0030 Nicotiana tabacum HOM05D006473 ORTHO05D008108 4.8e-15 85.5 171 36.8
PGSC0003DMG400013558 Solanum tuberosum HOM05D006473 ORTHO05D008108 3.1e-14 82.8 169 36.1
Nitab4.5_0011512g0010 Nicotiana tabacum HOM05D006473 ORTHO05D008108 5.3e-14 82.0 171 37.4
Aqoxy5G02466 Aquilegia oxysepala HOM05D006473 ORTHO05D008108 3.8e-12 75.9 145 40.7
CSS0026100 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 1.1e-11 74.3 185 37.3
CSS0046570 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 1.1e-11 74.3 185 37.3
Migut.H01260 Erythranthe guttata HOM05D006473 ORTHO05D008108 1.1e-11 74.3 155 36.1
Cc00_g04870 Coffea canephora HOM05D006473 ORTHO05D008108 1.4e-11 73.9 143 37.8
Sc07g0001930 Simmondsia chinensis HOM05D006473 ORTHO05D008108 1.2e-10 70.9 171 34.5
Nitab4.5_0000170g0320 Nicotiana tabacum HOM05D006473 ORTHO05D008108 2.1e-10 70.1 121 40.5
Lsat_1_v5_gn_1_29560 Lactuca sativa HOM05D006473 ORTHO05D008108 2.7e-10 69.7 196 33.2
EL10Ac6g15336 Beta vulgaris HOM05D006473 ORTHO05D008108 4.6e-10 68.9 163 35.0
Cpa.g.sc32.52 Carica papaya HOM05D006473 ORTHO05D008108 4.6e-10 68.9 173 38.7
vmacro08765 Vaccinium macrocarpon HOM05D006473 ORTHO05D008108 7.9e-10 68.2 167 35.9
Rhsim12G0015400 Rhododendron simsii HOM05D006473 ORTHO05D008108 3.9e-09 65.9 157 39.5
Actinidia32074 Actinidia chinensis HOM05D006473 ORTHO05D008108 5.1e-09 65.5 195 34.4
PSO675G8005 Papaver somniferum HOM05D006473 ORTHO05D008108 1.9e-08 63.5 179 35.2
MBI02_g01129_MAGBIO Magnolia biondii HOM05D006464 ORTHO05D007923 3.3e-08 62.8 131 45.8
ATR0763G071 Amborella trichopoda HOM05D006473 ORTHO05D008108 4.3e-08 62.4 168 31.0
ECA247G3587 Erigeron canadensis HOM05D006473 ORTHO05D008108 5.7e-08 62.0 189 31.7
DCAR_029496 Daucus carota HOM05D006473 ORTHO05D008108 7.4e-08 61.6 192 30.7
Actinidia12507 Actinidia chinensis HOM05D006473 ORTHO05D008108 1.3e-07 60.8 185 33.0
Hund23023 Selenicereus undatus HOM05D006473 ORTHO05D008108 3.7e-07 59.3 171 32.7
CDE05G3197 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 6.3e-07 58.5 147 31.3
HanXRQChr02g0035171 Helianthus annuus HOM05D006473 ORTHO05D008108 6.3e-07 58.5 171 42.1
HPP92_016064 Vanilla planifolia HOM05D006473 ORTHO05D008108 6.3e-07 58.5 148 34.5
SGA_v2.0_scaffold49G18372 Striga asiatica HOM05D006473 ORTHO05D008108 1.8e-06 57.0 143 32.9
CDE11G0296 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 4.1e-06 55.8 91 37.4
Hund04387 Selenicereus undatus HOM05D006473 ORTHO05D008108 5.3e-06 55.5 190 30.5
Zm00001eb078060 Zea mays HOM05D006473 ORTHO05D008108 5.3e-06 55.5 83 44.6


User provided reference genes

Program Settings