Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 4.0e-145 518.1 261 100.0
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 2.0e-96 356.3 279 70.6
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 4.1e-89 332.0 220 75.9
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 3.5e-85 318.9 266 67.3
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 1.0e-84 317.4 277 65.0
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 1.3e-84 317.0 263 63.9
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 2.2e-82 309.7 280 60.0
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 3.7e-82 308.9 263 62.4
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 3.7e-82 308.9 269 63.9
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 4.8e-82 308.5 216 69.9
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 8.2e-82 307.8 276 61.2
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 1.8e-81 306.6 238 68.5
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 1.2e-80 303.9 269 63.2
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 2.6e-80 302.8 214 70.6
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 2.6e-80 302.8 238 68.1
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 3.4e-80 302.4 238 67.6
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 5.0e-79 298.5 266 63.2
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 5.0e-79 298.5 255 63.5
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 1.1e-78 297.4 261 60.5
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 2.5e-78 296.2 221 67.9
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 5.5e-78 295.0 265 62.3
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 1.6e-77 293.5 272 59.6
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 6.1e-77 291.6 274 59.9
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 1.0e-76 290.8 268 59.7
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 1.4e-76 290.4 262 61.1
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 1.8e-76 290.0 214 68.2
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 8.8e-76 287.7 260 61.5
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.1e-75 287.3 262 61.5
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 1.5e-75 287.0 271 60.1
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 7.4e-75 284.6 261 61.3
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 7.4e-75 284.6 264 58.7
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 9.7e-75 284.3 260 61.5
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 4.8e-74 282.0 270 59.6
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 4.8e-74 282.0 264 61.0
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 8.2e-74 281.2 177 78.0
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 1.1e-73 280.8 271 60.5
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 2.4e-73 279.6 280 58.2
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 4.1e-73 278.9 279 58.4
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 4.1e-73 278.9 252 58.7
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 6.9e-73 278.1 240 61.2
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 6.9e-73 278.1 266 59.0
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 9.1e-73 277.7 280 59.3
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 1.5e-72 276.9 269 58.0
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 2.0e-72 276.6 212 66.0
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 2.6e-72 276.2 224 64.3
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 2.6e-72 276.2 271 55.7
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 4.5e-72 275.4 217 65.9
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 1.0e-71 274.2 266 57.5
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 1.7e-71 273.5 258 56.2
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 2.9e-71 272.7 234 59.8
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 5.0e-71 271.9 243 60.5
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 8.5e-71 271.2 266 56.0
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 1.4e-70 270.4 258 56.2
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 2.5e-70 269.6 242 57.0
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 4.2e-70 268.9 210 64.3
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 1.6e-69 266.9 260 55.4
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 1.6e-69 266.9 258 55.8
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.6e-69 266.9 205 66.8
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 1.6e-69 266.9 228 63.6
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 1.6e-69 266.9 292 52.4
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 2.1e-69 266.5 253 60.9
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 2.7e-69 266.2 257 55.3
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 3.6e-69 265.8 254 55.5
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 6.1e-69 265.0 256 59.4
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 7.9e-69 264.6 268 54.5
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 7.9e-69 264.6 253 58.1
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 2.3e-68 263.1 214 65.9
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 5.1e-68 261.9 253 56.5
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 5.1e-68 261.9 251 58.6
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 5.1e-68 261.9 261 55.2
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 5.1e-68 261.9 264 54.2
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 1.1e-67 260.8 266 53.8
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 3.3e-67 259.2 205 65.4
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 4.4e-67 258.8 267 55.1
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 5.7e-67 258.5 272 55.1
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 7.4e-67 258.1 265 56.6
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 1.3e-66 257.3 255 53.3
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 2.2e-66 256.5 263 53.2
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 3.7e-66 255.8 215 61.9
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 1.8e-65 253.4 257 51.8
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 9.1e-65 251.1 320 48.8
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 2.0e-64 250.0 256 57.8
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 2.6e-64 249.6 216 60.6
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 4.5e-64 248.8 287 53.0
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 7.7e-64 248.1 271 53.5
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 7.2e-62 241.5 279 53.8
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 4.7e-61 238.8 232 53.4
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 6.1e-61 238.4 205 59.0
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 8.0e-61 238.0 189 64.6
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 3.0e-60 236.1 197 60.9
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 9.7e-59 231.1 153 77.8
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 1.4e-57 227.3 295 47.8
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 3.5e-56 222.6 166 66.3
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 1.7e-55 220.3 194 61.9
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 3.8e-55 219.2 202 61.9
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.9e-54 216.9 144 77.8
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 3.6e-53 212.6 191 53.9
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 1.0e-52 211.1 152 72.4
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 4.4e-51 205.7 153 68.0
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 1.3e-50 204.1 184 60.3
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 2.4e-49 199.9 176 61.4
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 3.1e-49 199.5 220 50.0
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 4.1e-49 199.1 148 65.5
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 5.5e-46 188.7 177 58.8
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 5.5e-46 188.7 191 53.4
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 8.0e-45 184.9 196 51.5
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.2e-43 181.0 271 45.4
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 1.7e-42 177.2 206 45.1
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 2.0e-40 170.2 189 46.0
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 2.3e-36 156.8 114 68.4
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 6.8e-36 155.2 205 40.0
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 3.2e-33 146.4 197 40.1
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 7.3e-22 108.6 210 34.3
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 7.3e-22 108.6 210 34.3
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 7.3e-22 108.6 125 43.2
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 9.5e-22 108.2 82 69.5
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 1.2e-19 101.3 159 42.1
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 8.3e-18 95.1 123 37.4
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 1.3e-15 87.8 100 53.0
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 5.1e-15 85.9 244 28.7
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 1.1e-14 84.7 177 34.5
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 4.3e-14 82.8 103 46.6
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 1.2e-08 64.7 89 43.8
SalBow1G6520 Salvia bowleyana HOM05D001890 ORTHO05D008163 2.3e-07 60.5 92 44.6
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 6.6e-07 58.9 239 27.2


User provided reference genes

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