Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 2.3e-51 205.3 106 100.0
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 5.0e-30 134.4 90 74.4
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 6.6e-30 134.0 91 75.8
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 1.4e-27 126.3 88 75.0
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 4.9e-25 117.9 100 68.0
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 6.4e-25 117.5 86 72.1
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 4.1e-24 114.8 86 68.6
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 4.6e-23 111.3 93 66.7
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.0e-23 110.9 94 66.0
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.0e-22 110.2 93 66.7
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.0e-22 110.2 93 66.7
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 1.3e-22 109.8 93 66.7
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-22 109.8 93 66.7
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 1.7e-22 109.4 84 71.4
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 8.6e-22 107.1 94 64.9
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.1e-21 106.7 86 70.9
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 1.2e-20 103.2 85 65.9
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 2.8e-20 102.1 91 64.8
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 8.1e-20 100.5 90 63.3
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 1.1e-19 100.1 89 66.3
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 1.8e-19 99.4 88 63.6
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 2.3e-19 99.0 90 63.3
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 4.0e-19 98.2 85 65.9
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 8.9e-19 97.1 85 68.2
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 8.9e-19 97.1 84 61.9
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 8.9e-19 97.1 98 58.2
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 1.2e-18 96.7 83 62.7
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 1.2e-18 96.7 87 66.7
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 2.6e-18 95.5 88 59.1
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 3.4e-18 95.1 86 67.4
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 3.4e-18 95.1 85 61.2
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 3.4e-18 95.1 85 61.2
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 4.4e-18 94.7 88 56.8
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 5.8e-18 94.4 103 52.4
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.7e-17 92.8 84 60.7
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.7e-17 92.8 82 59.8
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 2.9e-17 92.0 91 62.6
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 3.7e-17 91.7 93 58.1
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 3.7e-17 91.7 88 61.4
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 6.4e-17 90.9 86 65.1
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 8.3e-17 90.5 85 60.0
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 1.1e-16 90.1 109 47.7
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 1.1e-16 90.1 108 48.1
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 1.9e-16 89.4 105 51.4
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 3.2e-16 88.6 89 61.8
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 3.2e-16 88.6 111 46.8
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 4.1e-16 88.2 92 57.6
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 4.1e-16 88.2 100 51.0
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 5.4e-16 87.8 76 65.8
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 9.2e-16 87.0 94 57.4
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 1.2e-15 86.7 86 59.3
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 1.2e-15 86.7 94 53.2
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.0e-14 83.6 106 50.0
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 1.3e-14 83.2 84 58.3
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.7e-14 82.8 87 56.3
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 5.1e-14 81.3 103 50.5
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 6.6e-14 80.9 87 55.2
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 6.6e-14 80.9 84 58.3
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 6.6e-14 80.9 109 45.9
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 1.5e-13 79.7 87 58.6
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 1.5e-13 79.7 86 55.8
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.5e-13 79.7 85 56.5
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 1.5e-13 79.7 80 60.0
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.9e-13 79.3 87 55.2
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.9e-13 79.3 87 55.2
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.5e-13 79.0 81 53.1
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 3.3e-13 78.6 85 56.5
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 4.3e-13 78.2 89 57.3
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 4.3e-13 78.2 79 58.2
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 5.6e-13 77.8 85 55.3
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 5.6e-13 77.8 85 56.5
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 5.6e-13 77.8 85 56.5
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 5.6e-13 77.8 85 56.5
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 5.6e-13 77.8 85 56.5
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 5.6e-13 77.8 85 56.5
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 5.6e-13 77.8 85 56.5
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 5.6e-13 77.8 79 58.2
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 7.3e-13 77.4 75 56.0
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 7.3e-13 77.4 98 50.0
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 9.5e-13 77.0 85 54.1
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 9.5e-13 77.0 78 56.4
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 9.5e-13 77.0 91 51.6
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 1.2e-12 76.6 79 57.0
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 1.6e-12 76.3 85 54.1
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 1.6e-12 76.3 85 54.1
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 2.8e-12 75.5 78 57.7
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 4.7e-12 74.7 76 59.2
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 4.7e-12 74.7 86 53.5
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 6.2e-12 74.3 85 52.9
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 6.2e-12 74.3 85 52.9
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 6.2e-12 74.3 85 52.9
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 8.1e-12 73.9 84 58.3
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 1.1e-11 73.6 79 57.0
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 1.4e-11 73.2 85 55.3
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 2.3e-11 72.4 79 53.2
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 3.1e-11 72.0 75 52.0
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 3.1e-11 72.0 75 58.7
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 4.0e-11 71.6 89 53.9
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 4.0e-11 71.6 86 53.5
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 4.0e-11 71.6 85 51.8
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 5.2e-11 71.2 80 55.0
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 6.8e-11 70.9 87 52.9
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 1.2e-10 70.1 85 51.8
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 1.5e-10 69.7 79 53.2
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 7.6e-10 67.4 82 52.4
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 7.6e-10 67.4 64 57.8
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 7.6e-10 67.4 90 48.9
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 1.7e-09 66.2 81 48.1
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 3.8e-09 65.1 78 51.3
arahy.Tifrunner.gnm1.ann1.I8YMJK Arachis hypogaea HOM05D005113 ORTHO05D006045 6.4e-09 64.3 71 50.7
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 1.1e-08 63.5 73 49.3
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 1.4e-08 63.2 73 56.2
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 2.4e-08 62.4 78 52.6
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 2.4e-08 62.4 80 53.8
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 2.4e-08 62.4 71 50.7
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 4.1e-08 61.6 78 50.0
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 4.1e-08 61.6 112 39.3
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 9.2e-08 60.5 78 48.7
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 9.2e-08 60.5 85 48.2
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 9.2e-08 60.5 71 49.3
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 1.2e-07 60.1 81 46.9
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 1.6e-07 59.7 79 48.1
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 1.6e-07 59.7 75 50.7
Sp4g18110 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.6e-07 59.7 52 65.4
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 1.6e-07 59.7 81 45.7
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 2.7e-07 58.9 78 50.0
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 2.7e-07 58.9 78 50.0
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 2.7e-07 58.9 78 50.0
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 2.7e-07 58.9 106 38.7
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 2.7e-07 58.9 71 49.3
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 6.0e-07 57.8 94 43.6
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 7.8e-07 57.4 78 48.7
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 7.8e-07 57.4 78 48.7
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 7.8e-07 57.4 55 58.2
arahy.Tifrunner.gnm1.ann1.HSX17H Arachis hypogaea HOM05D005113 ORTHO05D006045 1.0e-06 57.0 73 46.6
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 1.7e-06 56.2 98 42.9
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 2.3e-06 55.8 90 45.6
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 2.3e-06 55.8 95 42.1
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 2.3e-06 55.8 75 48.0
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 3.0e-06 55.5 84 46.4
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 6.6e-06 54.3 81 44.4
CDE07G0213 Ceratophyllum demersum HOM05D005113 ORTHO05D006045 8.6e-06 53.9 79 41.8


User provided reference genes

Program Settings