Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 0.0e+00 1233.4 633 100.0
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 9.0e-284 979.9 637 79.4
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 4.6e-280 967.6 636 79.9
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.6e-264 916.0 697 71.3
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 4.8e-229 798.1 640 68.0
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 8.5e-226 787.3 643 67.2
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 6.1e-224 781.2 640 65.9
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 7.0e-220 767.7 642 65.6
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.0e-219 766.1 643 66.4
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 4.5e-219 765.0 641 65.4
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 1.7e-218 763.1 637 65.0
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.9e-218 762.3 642 65.0
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 4.7e-216 755.0 641 63.8
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.3e-213 746.9 640 64.2
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 2.4e-212 742.7 646 63.5
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 1.6e-211 740.0 670 61.6
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 1.6e-211 740.0 642 64.3
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 5.6e-209 731.5 637 63.0
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 7.3e-209 731.1 627 61.9
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.7e-205 719.9 644 62.1
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 2.0e-203 713.0 627 61.2
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 6.6e-202 708.0 639 61.0
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.1e-200 703.0 647 62.0
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.8e-200 702.6 640 62.2
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 1.1e-199 700.7 642 62.3
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.2e-198 697.2 647 61.5
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 9.8e-198 694.1 635 60.0
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 6.4e-197 691.4 638 60.8
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 6.4e-197 691.4 636 61.2
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 8.3e-197 691.0 645 58.9
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.4e-196 690.3 640 61.1
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.4e-196 689.5 661 58.4
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 2.4e-196 689.5 637 60.3
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 2.4e-196 689.5 655 58.8
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 9.2e-196 687.6 640 60.8
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 2.1e-195 686.4 640 59.4
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 2.7e-195 686.0 635 60.0
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.5e-195 685.6 639 60.1
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 1.5e-193 680.2 643 60.5
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.6e-192 675.6 624 58.8
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 6.2e-192 674.9 639 59.3
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-191 673.7 672 57.1
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 6.8e-191 671.4 670 57.5
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 7.6e-190 667.9 670 57.2
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 9.9e-190 667.5 643 58.5
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 8.4e-189 664.5 637 58.9
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 3.5e-187 659.1 649 57.2
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 4.6e-187 658.7 635 58.1
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 6.0e-187 658.3 651 57.1
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.3e-186 657.1 659 56.6
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.1e-185 654.1 653 57.0
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 1.5e-185 653.7 644 56.4
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 2.1e-184 649.8 639 57.1
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 1.1e-183 647.5 637 56.8
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 3.1e-183 646.0 641 58.3
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 7.6e-182 641.3 611 59.6
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 1.7e-181 640.2 641 57.3
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 1.4e-180 637.1 637 56.4
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 1.9e-180 636.7 639 56.7
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 4.2e-180 635.6 639 58.1
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 9.6e-177 624.4 640 55.2
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.9e-172 610.1 640 54.7
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 6.6e-170 601.7 571 59.4
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 1.9e-169 600.1 510 66.3
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.3e-168 597.4 643 53.5
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.1e-168 596.7 643 53.0
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 5.3e-167 592.0 645 53.2
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 9.0e-167 591.3 654 53.5
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.2e-166 590.9 509 64.2
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 9.9e-166 587.8 649 53.8
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 8.4e-165 584.7 641 53.0
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 1.4e-164 583.9 694 50.4
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 4.2e-164 582.4 639 53.4
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.1e-163 580.1 650 52.0
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 8.7e-162 574.7 640 50.6
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.9e-161 573.5 647 51.6
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 1.9e-161 573.5 612 51.5
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 4.3e-161 572.4 643 50.5
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 2.1e-160 570.1 640 50.8
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 3.7e-160 569.3 612 51.8
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 4.8e-160 568.9 650 51.7
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 2.6e-158 563.1 636 50.8
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 2.6e-158 563.1 643 51.0
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.7e-157 560.5 639 51.0
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 6.5e-157 558.5 643 51.5
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.1e-156 557.8 611 50.4
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 7.1e-156 555.1 646 52.2
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 9.3e-156 554.7 631 50.4
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 4.6e-155 552.4 638 50.3
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 4.6e-155 552.4 650 48.9
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 7.9e-155 551.6 638 53.4
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 6.7e-154 548.5 638 49.4
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.5e-153 547.4 622 51.3
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 3.3e-153 546.2 637 49.1
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 4.3e-153 545.8 637 49.0
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 9.6e-153 544.7 665 48.3
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 9.6e-153 544.7 650 49.5
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 5.9e-150 535.4 637 48.4
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 1.0e-149 534.6 637 48.5
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.0e-149 534.6 394 68.8
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 1.1e-148 531.2 621 49.6
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 1.9e-148 530.4 623 49.9
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.5e-148 530.0 631 48.8
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 4.2e-148 529.3 640 48.4
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.6e-147 527.3 631 48.5
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 3.0e-146 523.1 639 50.5
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 3.9e-146 522.7 639 49.0
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 6.7e-146 521.9 639 49.1
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 2.5e-145 520.0 639 49.0
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 2.8e-144 516.5 637 48.7
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 5.3e-143 512.3 644 47.7
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 6.9e-143 511.9 644 47.7
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.2e-142 511.1 648 46.8
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 3.8e-141 506.1 571 52.2
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 7.2e-140 501.9 639 47.9
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.7e-139 500.0 644 47.7
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 4.6e-139 499.2 639 47.7
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 3.7e-136 489.6 644 47.4
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 2.2e-133 480.3 636 46.5
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 7.2e-132 475.3 619 46.8
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 1.6e-131 474.2 415 63.9
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 4.4e-129 466.1 610 45.1
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 3.2e-124 449.9 613 46.0
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 4.7e-123 446.0 641 43.4
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.5e-121 441.0 641 43.8
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.1e-119 434.9 324 68.5
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.7e-118 430.3 554 47.5
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 9.4e-116 421.8 649 44.8
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 8.3e-112 408.7 351 63.2
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.5e-108 397.1 377 60.2
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 8.8e-106 388.7 384 58.9
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 5.0e-101 372.9 397 55.7
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.6e-97 360.5 250 70.8
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.5e-92 344.7 390 52.8
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.1e-91 340.9 506 44.1
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.2e-89 335.1 204 81.4
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 7.8e-86 322.4 598 37.8
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.6e-83 314.7 430 48.4
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 6.2e-75 286.2 687 33.9
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 6.8e-74 282.7 258 60.1
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 6.2e-67 259.6 237 54.9
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 1.1e-66 258.8 243 53.5
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 4.9e-64 250.0 661 32.8
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.9e-63 248.1 600 32.5
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 5.1e-61 240.0 630 32.5
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 3.1e-58 230.7 411 36.0
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.4e-56 222.6 266 54.1
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.3e-53 215.3 232 53.9
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 3.7e-51 207.2 287 44.6
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 3.4e-49 200.7 265 46.0
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 9.9e-49 199.1 180 60.6
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 4.9e-48 196.8 329 40.7
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 6.4e-48 196.4 283 43.1
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 6.4e-48 196.4 259 48.6
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.2e-38 165.6 95 86.3
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 4.3e-36 157.1 203 51.2
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.8e-35 154.5 200 46.0
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.2e-33 149.1 253 43.9
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 2.0e-33 148.3 207 44.0
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 2.0e-33 148.3 360 31.9
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 7.6e-33 146.4 144 52.8
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.3e-32 145.6 221 41.6
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 1.1e-31 142.5 239 41.8
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 2.6e-25 121.3 89 71.9
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 6.1e-22 110.2 192 38.5
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.5e-17 95.5 96 50.0
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 5.9e-17 93.6 260 30.8
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 6.5e-16 90.1 81 55.6
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 6.5e-16 90.1 68 63.2
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 1.1e-15 89.4 198 32.8
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.5e-12 79.0 88 47.7
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.3e-08 65.9 44 63.6
ATR1154G039 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.5e-07 62.4 130 35.4
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 4.2e-07 60.8 158 32.9
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.6e-06 57.8 103 38.8


User provided reference genes

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