Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 2.1e-233 812.0 404 100.0
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 2.1e-233 812.0 404 100.0
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 3.1e-229 798.1 404 98.3
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 2.7e-209 731.9 405 90.1
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 7.9e-209 730.3 405 89.9
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 5.1e-200 701.0 405 85.9
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 4.8e-198 694.5 404 85.4
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 5.9e-196 687.6 407 84.0
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 2.3e-192 675.6 407 82.6
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 8.2e-190 667.2 407 80.8
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.8e-189 666.0 407 81.3
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.8e-189 666.0 407 81.3
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 3.5e-188 661.8 409 80.0
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 4.5e-188 661.4 407 81.3
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 5.9e-188 661.0 410 79.0
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 2.2e-187 659.1 407 79.9
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 5.0e-187 657.9 407 80.1
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 8.5e-187 657.1 407 79.4
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 9.4e-186 653.7 408 79.4
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 4.7e-185 651.4 407 78.4
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 2.3e-184 649.0 408 78.4
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 4.0e-184 648.3 407 78.6
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 5.2e-184 647.9 407 77.6
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.5e-183 646.4 407 78.6
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.6e-183 645.6 398 80.4
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.6e-183 645.6 407 77.4
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 4.4e-183 644.8 407 79.6
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 4.4e-183 644.8 407 77.6
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 5.7e-183 644.4 398 80.4
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 7.5e-183 644.0 407 78.9
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 2.2e-182 642.5 407 78.9
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 2.8e-182 642.1 407 78.4
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.3e-182 641.0 400 79.8
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 8.2e-182 640.6 407 77.4
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.1e-181 640.2 407 78.6
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.1e-181 640.2 407 78.6
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 1.4e-181 639.8 407 79.6
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 4.5e-180 634.8 407 76.4
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.3e-179 633.3 406 76.4
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.2e-179 632.5 407 76.4
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.2e-179 632.5 406 77.1
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 1.5e-178 629.8 407 76.9
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 4.2e-178 628.2 408 76.5
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 4.7e-177 624.8 405 75.1
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 4.7e-177 624.8 406 76.6
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 8.0e-177 624.0 405 75.3
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.2e-175 620.2 405 74.8
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 1.5e-175 619.8 406 74.9
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 9.8e-175 617.1 407 76.7
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.3e-174 616.7 409 75.3
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 1.7e-174 616.3 406 74.6
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 3.7e-174 615.1 407 75.2
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 4.8e-174 614.8 398 75.1
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 7.0e-173 610.9 405 73.6
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 1.2e-172 610.1 407 73.7
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 1.6e-172 609.8 402 74.4
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.6e-172 609.8 405 73.3
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 3.5e-172 608.6 407 74.2
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 5.9e-172 607.8 436 71.1
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 7.7e-172 607.4 408 73.8
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 2.9e-171 605.5 406 72.9
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 3.8e-171 605.1 406 73.6
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.9e-170 602.8 407 72.5
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 5.5e-170 601.3 407 72.7
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 9.5e-170 600.5 408 72.1
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.2e-169 600.1 406 73.9
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 1.2e-169 600.1 406 72.9
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 2.1e-169 599.4 407 72.2
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 2.8e-169 599.0 409 72.4
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 1.0e-168 597.0 411 72.0
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.4e-168 596.7 411 71.5
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.8e-168 596.3 408 72.5
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 4.0e-168 595.1 406 71.7
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 4.0e-168 595.1 411 71.3
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 4.0e-168 595.1 411 71.3
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 4.0e-168 595.1 411 71.3
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 5.2e-168 594.7 406 71.2
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 5.2e-168 594.7 404 72.3
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 8.8e-168 594.0 397 74.1
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.2e-167 593.6 405 72.1
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 2.6e-167 592.4 411 71.0
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 5.7e-167 591.3 411 70.8
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 9.8e-167 590.5 399 71.7
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 3.7e-166 588.6 408 70.6
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 4.9e-166 588.2 404 70.3
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 8.3e-166 587.4 408 72.1
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.4e-165 586.6 408 71.1
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.4e-165 585.9 407 72.7
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 3.1e-165 585.5 402 73.1
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 5.4e-165 584.7 402 72.9
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 9.2e-165 583.9 405 70.6
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.2e-164 583.6 410 71.2
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.6e-164 583.2 411 71.3
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.7e-164 582.4 399 71.2
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 3.5e-164 582.0 404 70.5
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 4.5e-164 581.6 404 70.5
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.7e-163 579.7 408 70.3
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 5.0e-163 578.2 409 71.1
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 8.6e-163 577.4 407 69.0
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 3.3e-162 575.5 407 69.5
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 3.3e-162 575.5 407 69.5
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 5.6e-162 574.7 405 71.9
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 1.2e-161 573.5 407 72.5
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 3.6e-161 572.0 422 67.8
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 3.4e-159 565.5 357 77.3
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 9.8e-159 563.9 491 61.3
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 3.7e-158 562.0 359 78.0
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.2e-157 558.9 403 67.7
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 4.1e-157 558.5 310 90.3
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 3.5e-156 555.4 404 67.8
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 1.8e-152 543.1 407 67.3
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 3.1e-152 542.3 417 65.7
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 4.4e-151 538.5 408 67.6
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 1.1e-149 533.9 404 65.1
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 7.0e-149 531.2 404 64.9
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 1.9e-146 523.1 407 65.6
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 7.5e-143 511.1 351 71.8
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 1.3e-142 510.4 402 62.2
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.0e-139 500.7 402 60.4
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 1.1e-136 490.7 404 62.4
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.8e-129 466.1 314 74.8
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.7e-129 465.3 404 58.2
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 5.2e-128 461.8 415 56.1
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 2.9e-118 429.5 273 75.1
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 8.4e-118 427.9 370 58.6
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.3e-110 404.1 273 71.1
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 1.4e-109 400.6 312 63.8
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 3.0e-107 392.9 265 74.3
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 3.1e-104 382.9 409 47.9
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 6.0e-100 368.6 419 47.3
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.0e-99 367.9 411 53.8
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 9.0e-96 354.8 422 47.4
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.3e-86 324.3 409 43.5
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 6.7e-83 312.0 249 64.3
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.1e-80 304.7 442 40.5
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 1.7e-70 270.8 176 73.9
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 1.5e-69 267.7 161 81.4
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 4.4e-66 256.1 172 76.7
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 2.8e-65 253.4 176 71.0
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.5e-61 241.1 211 56.9
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 4.4e-58 229.6 135 82.2
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 2.2e-57 227.3 158 65.8
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 1.8e-51 207.6 346 35.3
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.2e-50 204.9 159 61.6
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 1.3e-49 201.4 113 84.1
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 3.7e-49 199.9 148 62.8
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 7.8e-39 165.6 93 83.9
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 1.7e-33 147.9 97 71.1
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 2.2e-25 120.9 97 68.0
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 1.2e-18 98.6 82 68.3
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 1.3e-17 95.1 242 30.6
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 2.2e-17 94.4 70 68.6
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 8.7e-14 82.4 56 80.4


User provided reference genes

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