Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 7.1e-196 687.2 376 100.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.4e-119 433.7 378 67.7
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 2.4e-106 389.8 383 64.5
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 8.7e-101 371.3 380 63.2
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 3.3e-100 369.4 394 60.4
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 4.0e-90 335.9 416 55.0
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 7.4e-76 288.5 382 56.8
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.3e-75 287.7 380 51.3
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.8e-75 286.6 377 52.0
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 4.8e-75 285.8 382 50.0
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 6.9e-74 282.0 413 50.4
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 6.1e-70 268.9 368 49.5
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 6.1e-70 268.9 388 49.7
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 7.9e-70 268.5 375 50.7
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 7.9e-70 268.5 399 47.6
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 1.8e-69 267.3 375 54.4
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.7e-67 259.6 399 48.4
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 4.8e-67 259.2 377 49.9
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 1.2e-65 254.6 398 48.0
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.2e-65 254.6 399 47.9
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.5e-64 248.8 399 47.1
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.5e-64 248.8 400 47.8
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 1.1e-63 248.1 370 47.6
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 3.2e-63 246.5 406 47.3
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 9.4e-63 245.0 372 49.7
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 3.6e-62 243.0 408 46.3
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 3.9e-61 239.6 381 49.1
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 9.7e-60 235.0 396 49.0
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 2.2e-59 233.8 376 48.4
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 4.8e-59 232.6 390 47.4
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.0e-56 224.9 387 50.6
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 2.9e-56 223.4 381 45.9
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 2.9e-56 223.4 383 46.0
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.8e-56 223.0 368 48.4
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 5.0e-56 222.6 396 49.5
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 2.5e-55 220.3 379 49.9
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 3.2e-55 219.9 406 48.0
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 3.2e-55 219.9 385 49.9
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.2e-54 218.0 370 44.9
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 2.1e-54 217.2 382 47.6
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 2.0e-52 210.7 379 44.1
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 3.3e-52 209.9 375 47.2
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 4.4e-52 209.5 299 54.5
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 1.3e-51 208.0 389 44.7
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 4.8e-51 206.1 411 42.6
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.4e-50 204.5 369 48.2
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.8e-50 204.1 381 47.5
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 2.4e-50 203.8 378 48.9
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.7e-49 200.3 388 46.4
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.9e-49 199.1 377 42.4
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 7.7e-49 198.7 434 42.4
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.0e-48 198.4 380 44.7
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 1.0e-48 198.4 357 44.8
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 1.0e-48 198.4 380 43.9
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 1.7e-48 197.6 299 52.8
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 8.5e-48 195.3 384 43.5
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 2.5e-47 193.7 384 43.8
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.0e-45 188.3 367 42.2
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 6.8e-45 185.7 377 40.6
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 4.4e-44 183.0 381 43.3
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.7e-44 182.6 377 40.1
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 9.8e-44 181.8 386 41.7
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.8e-42 177.6 254 46.1
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.4e-42 177.2 390 43.1
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 1.0e-40 171.8 379 44.1
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.3e-40 171.4 273 46.9
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.2e-40 170.6 390 40.5
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 3.8e-40 169.9 252 49.2
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 1.9e-39 167.5 364 40.7
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 5.5e-39 166.0 375 38.9
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 7.2e-39 165.6 422 42.7
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 8.0e-38 162.2 412 42.5
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 8.0e-38 162.2 261 44.8
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.0e-37 161.8 342 40.6
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.0e-37 161.8 417 37.2
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.3e-37 160.6 386 42.7
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 2.0e-36 157.5 406 36.0
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 7.5e-36 155.6 411 38.7
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 9.8e-36 155.2 254 51.6
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 3.7e-35 153.3 302 43.0
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.2e-33 148.3 373 37.8
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.6e-33 147.9 428 37.1
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.5e-33 146.4 236 46.6
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 5.0e-32 142.9 376 37.2
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 6.6e-32 142.5 386 40.2
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 4.3e-31 139.8 366 34.4
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 2.8e-30 137.1 291 41.6
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.6e-30 136.7 227 42.3
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.6e-30 136.7 366 35.8
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.0e-29 135.2 323 38.4
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 1.4e-29 134.8 313 42.2
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.8e-29 134.4 370 35.1
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 1.5e-28 131.3 191 47.6
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 3.4e-28 130.2 344 35.8
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 7.5e-28 129.0 391 32.7
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 2.9e-27 127.1 383 32.4
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 4.9e-27 126.3 364 33.8
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 4.9e-27 126.3 134 59.7
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 8.3e-27 125.6 365 35.6
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 4.1e-26 123.2 371 34.2
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 1.2e-25 121.7 329 35.3
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 4.6e-25 119.8 264 38.6
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.7e-24 117.9 385 34.3
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 1.1e-23 115.2 382 34.3
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 5.6e-23 112.8 148 45.9
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 2.1e-22 110.9 337 34.7
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.1e-22 110.9 375 34.7
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 3.6e-22 110.2 385 32.2
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.8e-21 107.8 369 37.1
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 6.8e-21 105.9 367 36.0
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 6.8e-21 105.9 368 33.7
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-20 105.1 142 45.1
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.2e-20 105.1 132 47.7
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 2.0e-20 104.4 142 45.1
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 2.0e-20 104.4 388 31.7
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 2.6e-20 104.0 372 32.0
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 3.4e-20 103.6 366 33.3
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 7.5e-20 102.4 369 36.9
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 9.8e-20 102.1 177 39.5
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.3e-19 101.7 151 48.3
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.3e-19 101.7 159 44.0
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.2e-19 100.9 133 47.4
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.2e-19 100.9 133 47.4
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 2.9e-19 100.5 135 48.9
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 2.9e-19 100.5 178 37.6
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 3.7e-19 100.1 372 31.7
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 4.9e-19 99.8 143 44.8
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 4.9e-19 99.8 143 44.8
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.1e-18 98.6 140 45.7
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.4e-18 97.4 128 49.2
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 3.2e-18 97.1 130 46.2
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 3.2e-18 97.1 130 46.2
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 3.2e-18 97.1 130 46.2
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 9.2e-18 95.5 367 32.4
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 9.2e-18 95.5 379 30.1
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 1.2e-17 95.1 374 35.0
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.6e-17 94.7 77 59.7
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.6e-17 93.2 149 45.6
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 1.0e-16 92.0 156 41.0
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 3.0e-16 90.5 370 33.8
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 3.9e-16 90.1 238 31.9
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.1e-15 88.6 367 29.2
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.5e-15 88.2 261 33.0
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 7.3e-15 85.9 370 33.5
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 9.5e-15 85.5 128 46.9
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 1.2e-14 85.1 370 33.2
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.2e-14 85.1 49 83.7
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.1e-14 84.3 52 73.1
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 2.1e-14 84.3 114 45.6
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 3.6e-14 83.6 41 87.8
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 1.4e-13 81.6 50 76.0
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 4.0e-13 80.1 128 43.0
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 6.8e-13 79.3 112 46.4
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 6.8e-13 79.3 112 46.4
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 1.2e-12 78.6 123 43.9
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 1.4e-10 71.6 370 28.6
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 1.9e-10 71.2 384 26.6
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.4e-10 69.7 39 74.4
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 7.1e-10 69.3 42 69.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 2.1e-09 67.8 225 27.1
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.3e-08 64.3 77 46.8
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.0e-08 63.9 37 70.3
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 6.6e-08 62.8 94 42.6
AUR62012019 Chenopodium quinoa HOM05D003648 ORTHO05D004267 9.5e-07 58.9 383 29.0
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 9.5e-07 58.9 138 31.9
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.2e-06 58.5 37 62.2
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.2e-06 58.5 288 26.4
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 3.6e-06 57.0 260 25.8
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 8.1e-06 55.8 169 28.4


User provided reference genes

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