Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 6.1e-263 910.2 442 100.0
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 3.6e-231 804.7 442 86.4
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 2.1e-226 788.9 439 84.7
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 7.8e-226 786.9 442 84.6
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 3.4e-221 771.5 442 81.9
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 3.4e-221 771.5 442 82.4
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 7.5e-221 770.4 439 82.2
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 1.9e-219 765.8 438 82.4
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.9e-219 765.8 442 81.7
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 4.1e-219 764.6 439 81.5
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 9.2e-219 763.5 438 82.9
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.1e-218 762.3 441 81.9
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 4.6e-218 761.1 439 81.3
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 1.7e-217 759.2 439 82.2
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 3.0e-217 758.4 439 81.1
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 3.3e-216 755.0 431 81.9
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 5.6e-216 754.2 439 80.0
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 9.5e-216 753.4 441 80.5
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.2e-215 753.1 442 79.9
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 2.8e-215 751.9 439 79.7
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 8.1e-215 750.4 439 80.6
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 1.8e-214 749.2 438 82.0
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 3.1e-214 748.4 442 80.5
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.5e-213 746.1 442 80.1
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 1.3e-212 743.0 458 77.7
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 1.3e-212 743.0 437 79.2
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 2.2e-212 742.3 438 78.8
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 4.9e-212 741.1 438 78.3
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.1e-211 740.0 439 79.7
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 1.9e-211 739.2 442 79.0
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 2.4e-211 738.8 439 77.9
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 3.2e-211 738.4 431 79.6
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 5.4e-211 737.6 430 79.5
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 7.1e-211 737.3 440 79.1
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 7.1e-211 737.3 441 77.3
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 1.6e-210 736.1 441 80.5
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 2.3e-209 732.3 439 77.2
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 8.7e-209 730.3 442 77.8
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 1.1e-208 729.9 438 77.6
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 3.3e-208 728.4 437 79.2
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 9.6e-208 726.9 443 78.3
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 1.2e-207 726.5 430 77.9
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 1.6e-207 726.1 434 78.3
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 2.1e-207 725.7 443 76.7
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 2.8e-207 725.3 441 76.6
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 3.6e-207 724.9 440 77.5
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 6.2e-207 724.2 441 77.6
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.1e-206 723.4 431 77.7
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 1.4e-206 723.0 439 75.6
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 1.8e-206 722.6 437 76.7
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 4.0e-206 721.5 440 77.0
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 6.9e-206 720.7 440 76.1
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 2.0e-205 719.2 437 76.4
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 5.8e-205 717.6 438 76.5
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 7.6e-205 717.2 441 76.2
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 7.6e-205 717.2 439 75.4
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 9.9e-205 716.8 437 76.4
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 1.3e-204 716.5 426 78.6
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 1.3e-204 716.5 438 75.3
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 6.4e-204 714.1 427 78.9
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 1.4e-203 713.0 437 76.4
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.9e-203 712.6 451 75.4
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 2.4e-203 712.2 439 75.9
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 2.4e-203 712.2 438 76.3
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 3.5e-202 708.4 442 75.3
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 3.5e-202 708.4 395 83.0
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 4.6e-202 708.0 423 79.7
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 1.0e-201 706.8 446 74.4
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 3.0e-201 705.3 442 75.3
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 8.7e-201 703.7 441 76.4
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 1.5e-200 703.0 436 77.5
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 7.3e-200 700.7 442 76.2
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 9.6e-200 700.3 427 78.0
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 1.3e-199 699.9 425 78.4
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.6e-199 699.5 431 75.9
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 1.2e-197 693.3 421 78.1
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 1.7e-196 689.5 439 74.5
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 2.9e-196 688.7 414 77.8
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 4.9e-196 688.0 426 76.3
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 4.9e-196 688.0 417 76.7
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.4e-195 686.4 467 72.2
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.4e-195 686.4 451 74.3
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 9.3e-195 683.7 498 68.9
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 1.5e-192 676.4 439 73.3
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.9e-192 676.0 423 74.5
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 1.1e-190 670.2 422 76.3
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.4e-190 669.8 453 72.4
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 5.5e-187 657.9 431 71.5
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 3.0e-185 652.1 473 68.1
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 6.7e-185 651.0 397 77.6
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 5.3e-182 641.3 431 70.1
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 8.4e-180 634.0 472 66.9
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 1.0e-177 627.1 447 68.5
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.1e-174 617.1 430 66.0
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 9.0e-174 614.0 441 64.4
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 1.6e-170 603.2 421 68.9
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 1.0e-169 600.5 439 67.7
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 2.5e-168 595.9 364 78.3
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 4.3e-168 595.1 540 58.0
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 7.4e-168 594.3 359 79.9
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.7e-167 593.2 475 60.2
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 5.9e-165 584.7 396 70.7
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 5.7e-160 568.2 438 64.2
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.5e-157 560.1 375 69.9
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 9.4e-155 550.8 441 58.5
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 4.1e-150 535.4 421 62.9
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 5.9e-149 531.6 441 58.0
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 5.0e-148 528.5 463 56.2
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 6.5e-148 528.1 467 58.5
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 8.5e-148 527.7 435 57.0
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 5.7e-136 488.4 430 54.9
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 2.1e-130 469.9 443 52.8
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 9.2e-126 454.5 270 77.4
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 8.0e-122 441.4 410 53.7
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 2.1e-114 416.8 244 77.9
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 4.6e-109 399.1 244 79.5
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 5.6e-99 365.5 196 85.2
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.1e-97 359.8 196 82.1
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 9.9e-96 354.8 244 73.0
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 3.8e-95 352.8 279 63.1
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 7.1e-94 348.6 391 41.9
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 6.0e-93 345.5 450 40.4
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 1.7e-92 344.0 503 38.0
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 6.1e-61 239.2 173 67.6
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 7.9e-61 238.8 197 61.4
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.6e-53 214.5 169 58.6
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.4e-49 201.4 245 45.3
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 2.0e-48 197.6 428 31.8
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 4.5e-48 196.4 184 55.4
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 3.6e-45 186.8 145 62.1
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 3.3e-43 180.3 152 59.2
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 6.3e-42 176.0 94 78.7
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 9.1e-41 172.2 195 48.7
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 2.6e-40 170.6 113 67.3
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 6.7e-36 156.0 132 56.1
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 4.8e-34 149.8 145 53.1
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.0e-31 142.1 96 66.7
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 1.3e-31 141.7 125 59.2
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 1.1e-30 138.7 86 69.8
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 2.0e-27 127.9 129 53.5
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 7.5e-27 125.9 126 53.2
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 4.5e-24 116.7 126 49.2
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 1.5e-19 101.7 67 76.1
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.2e-18 97.8 96 49.0
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 2.8e-18 97.4 66 68.2
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 3.8e-15 87.0 65 67.7
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 5.6e-14 83.2 67 64.2
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 4.0e-12 77.0 188 30.9
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 1.7e-10 71.6 82 50.0
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 5.4e-09 66.6 55 61.8
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 5.4e-09 66.6 55 61.8
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 1.2e-08 65.5 53 62.3
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 3.0e-07 60.8 51 56.9
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.5e-06 58.5 37 73.0


User provided reference genes

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