Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 2.8e-61 238.4 118 100.0
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 3.2e-49 198.4 120 82.5
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.7e-47 192.6 121 81.8
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 5.0e-47 191.0 115 80.9
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 1.5e-46 189.5 115 80.0
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 4.3e-46 188.0 121 79.3
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 5.6e-46 187.6 118 78.8
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.6e-45 186.0 109 82.6
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 8.1e-45 183.7 117 80.3
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 3.1e-44 181.8 115 80.9
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 5.2e-44 181.0 109 82.6
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 6.8e-44 180.6 118 74.6
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.2e-43 179.9 115 76.5
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 1.2e-43 179.9 109 82.6
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 1.2e-43 179.9 104 82.7
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.2e-43 179.9 110 79.1
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.2e-43 179.9 110 79.1
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 2.0e-43 179.1 109 80.7
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.6e-43 178.7 98 86.7
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 2.6e-43 178.7 106 78.3
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 4.4e-43 177.9 109 80.7
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 9.8e-43 176.8 110 80.0
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.3e-42 176.4 113 74.3
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.7e-42 176.0 115 77.4
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.7e-42 176.0 108 81.5
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.7e-42 176.0 119 78.2
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 2.9e-42 175.3 117 74.4
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 2.9e-42 175.3 109 78.9
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 3.7e-42 174.9 115 70.4
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 4.9e-42 174.5 118 76.3
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 4.9e-42 174.5 114 76.3
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 6.4e-42 174.1 115 75.7
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 6.4e-42 174.1 109 78.9
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 8.3e-42 173.7 108 80.6
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 1.1e-41 173.3 106 79.2
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.4e-41 172.2 118 71.2
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.1e-41 171.4 119 70.6
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.4e-41 171.0 117 70.9
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.4e-41 171.0 117 70.9
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 5.4e-41 171.0 101 83.2
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 9.2e-41 170.2 120 72.5
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 9.2e-41 170.2 117 73.5
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 9.2e-41 170.2 120 72.5
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 9.2e-41 170.2 115 75.7
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 2.1e-40 169.1 116 67.2
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 2.7e-40 168.7 109 72.5
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 2.7e-40 168.7 104 76.9
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 3.5e-40 168.3 118 67.8
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 4.6e-40 167.9 108 76.9
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 6.0e-40 167.5 111 71.2
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 6.0e-40 167.5 100 79.0
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 7.8e-40 167.2 111 70.3
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 1.0e-39 166.8 110 73.6
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.3e-39 166.4 113 67.3
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.3e-39 166.4 115 72.2
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.7e-39 166.0 116 69.0
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 1.7e-39 166.0 106 73.6
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.7e-39 166.0 124 66.9
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.3e-39 165.6 103 73.8
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 3.0e-39 165.2 104 76.0
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 3.9e-39 164.9 116 68.1
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 5.1e-39 164.5 115 71.3
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 5.1e-39 164.5 115 68.7
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 5.1e-39 164.5 112 67.9
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 5.1e-39 164.5 115 68.7
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 5.1e-39 164.5 112 67.9
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 5.1e-39 164.5 115 68.7
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 5.1e-39 164.5 101 74.3
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 5.1e-39 164.5 101 74.3
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 6.6e-39 164.1 115 68.7
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 6.6e-39 164.1 113 67.3
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 6.6e-39 164.1 107 73.8
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 6.6e-39 164.1 113 67.3
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 8.6e-39 163.7 100 75.0
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 8.6e-39 163.7 104 74.0
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 8.6e-39 163.7 102 74.5
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 8.6e-39 163.7 106 73.6
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.1e-38 163.3 114 72.8
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.1e-38 163.3 112 70.5
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 1.5e-38 162.9 112 67.9
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.5e-38 162.9 106 72.6
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 1.9e-38 162.5 115 64.3
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 1.9e-38 162.5 115 64.3
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.9e-38 162.5 110 67.3
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.9e-38 162.5 117 67.5
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 2.5e-38 162.2 100 77.0
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.5e-38 162.2 109 74.3
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.5e-38 162.2 106 72.6
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 2.5e-38 162.2 106 73.6
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 2.5e-38 162.2 110 71.8
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.5e-38 162.2 112 68.8
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 2.5e-38 162.2 112 71.4
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.3e-38 161.8 101 73.3
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.3e-38 161.8 106 72.6
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 4.3e-38 161.4 113 67.3
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 4.3e-38 161.4 113 67.3
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 4.3e-38 161.4 114 65.8
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 4.3e-38 161.4 107 71.0
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 4.3e-38 161.4 108 69.4
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 4.3e-38 161.4 101 74.3
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 4.3e-38 161.4 99 73.7
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 5.6e-38 161.0 110 68.2
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 5.6e-38 161.0 113 67.3
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 7.3e-38 160.6 115 63.5
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.3e-38 160.6 106 71.7
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.3e-38 160.6 106 71.7
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 9.5e-38 160.2 113 65.5
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 9.5e-38 160.2 113 65.5
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.2e-37 159.8 101 72.3
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.2e-37 159.8 106 72.6
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 2.1e-37 159.1 101 72.3
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.8e-37 158.7 117 65.0
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 3.6e-37 158.3 113 68.1
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.6e-37 158.3 106 70.8
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 3.6e-37 158.3 108 70.4
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.1e-36 156.8 110 70.9
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.4e-36 156.4 103 69.9
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 1.4e-36 156.4 107 69.2
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 2.3e-36 155.6 104 73.1
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 3.1e-36 155.2 111 66.7
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.1e-36 155.2 99 72.7
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.1e-36 155.2 118 66.1
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 5.2e-36 154.5 121 65.3
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 8.9e-36 153.7 115 65.2
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.2e-35 153.3 109 68.8
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 1.5e-35 152.9 108 69.4
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 3.4e-35 151.8 109 67.9
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 3.4e-35 151.8 109 67.9
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 4.4e-35 151.4 106 69.8
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 1.3e-34 149.8 85 83.5
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.7e-34 149.4 118 64.4
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 3.8e-34 148.3 108 65.7
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.1e-33 146.7 118 62.7
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.4e-33 146.4 86 77.9
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 2.4e-33 145.6 118 61.9
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.6e-32 142.9 113 61.1
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 4.6e-32 141.4 107 63.6
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.0e-31 140.2 90 70.0
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 2.3e-31 139.0 83 77.1
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 3.3e-30 135.2 107 60.7
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 7.3e-30 134.0 115 58.3
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 3.2e-25 118.6 60 90.0
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 5.4e-25 117.9 95 58.9
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 3.3e-22 108.6 55 90.9
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 2.8e-21 105.5 103 50.5
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 1.1e-20 103.6 69 68.1
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 9.0e-20 100.5 93 53.8
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.4e-19 98.6 61 78.7
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 4.9e-18 94.7 54 79.6
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 3.2e-17 92.0 84 53.6
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.0e-15 85.5 67 59.7
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 1.1e-14 83.6 73 52.1
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 3.3e-14 82.0 68 63.2
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.5e-11 73.2 59 55.9
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 1.2e-08 63.5 50 60.0
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 7.9e-08 60.8 59 54.2
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.3e-07 60.1 111 38.7


User provided reference genes

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