Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 4.2e-133 478.0 240 100.0
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 4.7e-76 288.5 246 65.9
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.9e-73 279.3 246 61.8
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 7.1e-64 248.1 246 60.6
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 8.1e-60 234.6 239 54.4
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 3.8e-57 225.7 241 53.1
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.1e-55 219.9 243 53.5
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.0e-55 218.4 253 51.4
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 3.0e-54 216.1 241 52.7
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 4.8e-52 208.8 243 53.5
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.5e-50 203.8 246 49.6
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.6e-50 203.0 241 50.6
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 9.9e-50 201.1 217 50.7
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 6.4e-49 198.4 245 49.0
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 8.4e-49 198.0 245 46.5
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.5e-47 192.6 242 48.8
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 3.0e-46 189.5 242 48.3
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 3.9e-46 189.1 227 46.3
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 8.7e-46 188.0 241 49.4
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 1.6e-44 183.7 257 44.4
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.8e-44 183.0 258 43.0
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.7e-44 182.6 258 43.0
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 8.1e-44 181.4 251 44.2
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 4.0e-43 179.1 255 47.5
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 5.3e-43 178.7 241 47.3
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 5.3e-43 178.7 261 43.3
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 2.6e-42 176.4 257 43.2
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 2.6e-42 176.4 261 42.9
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 3.4e-42 176.0 250 43.6
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.3e-41 174.1 249 47.0
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.4e-41 171.8 262 43.1
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.4e-40 170.6 254 42.5
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.9e-40 170.2 210 50.0
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 2.4e-40 169.9 241 46.1
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 3.2e-40 169.5 244 44.7
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 2.1e-39 166.8 218 45.0
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 2.1e-39 166.8 255 42.4
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.1e-39 166.8 243 42.8
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.3e-38 164.1 260 41.2
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 1.8e-38 163.7 254 44.9
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.8e-38 163.7 267 41.2
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 3.9e-38 162.5 250 44.0
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.1e-37 161.0 245 42.4
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.9e-37 160.2 253 40.7
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 2.5e-37 159.8 254 43.3
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 3.3e-37 159.5 259 41.7
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.3e-37 159.1 258 42.2
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 4.3e-37 159.1 259 43.2
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.3e-36 157.5 214 46.7
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.6e-36 157.1 242 39.7
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 2.8e-36 156.4 247 41.3
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 2.8e-36 156.4 247 41.3
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 2.8e-36 156.4 234 41.0
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 3.7e-36 156.0 246 40.7
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.7e-36 156.0 247 43.3
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 4.8e-36 155.6 251 41.0
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 4.8e-36 155.6 257 41.2
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 6.2e-36 155.2 252 44.0
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 6.2e-36 155.2 259 40.2
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 6.2e-36 155.2 253 41.1
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.4e-35 154.1 247 41.3
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.8e-35 153.7 241 44.8
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.8e-35 153.7 259 41.7
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 3.1e-35 152.9 253 40.7
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.1e-35 152.9 240 42.9
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 4.0e-35 152.5 259 40.2
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 4.0e-35 152.5 241 44.4
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 5.3e-35 152.1 278 40.6
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 5.3e-35 152.1 251 39.4
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.2e-34 151.0 268 39.2
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.2e-34 151.0 259 40.2
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.5e-34 150.6 255 39.2
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.5e-34 150.6 247 41.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.5e-34 150.6 255 41.2
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.0e-34 150.2 240 39.2
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 2.6e-34 149.8 254 39.4
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 3.4e-34 149.4 250 40.8
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 3.4e-34 149.4 255 38.8
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 4.5e-34 149.1 240 42.1
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 5.8e-34 148.7 241 44.0
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.6e-34 148.3 249 41.0
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.0e-33 147.9 250 40.4
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.0e-33 147.9 254 40.2
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.7e-33 147.1 225 40.9
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 1.7e-33 147.1 249 41.0
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.7e-33 147.1 237 41.4
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 2.2e-33 146.7 257 39.3
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 2.2e-33 146.7 253 39.9
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.9e-33 146.4 252 40.9
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 2.9e-33 146.4 237 41.4
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 3.8e-33 146.0 234 40.6
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 4.9e-33 145.6 247 37.2
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.1e-32 144.4 210 44.3
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.1e-32 144.4 223 39.9
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.4e-32 144.1 246 41.1
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.9e-32 143.7 244 40.2
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 5.5e-32 142.1 207 41.1
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 7.1e-32 141.7 228 41.2
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.2e-31 141.0 214 41.1
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.6e-31 140.6 257 36.2
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.7e-31 139.8 259 39.8
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.3e-30 137.5 255 37.6
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 5.1e-30 135.6 236 41.1
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 8.7e-30 134.8 239 39.7
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 1.1e-29 134.4 253 39.9
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.9e-29 133.7 238 39.1
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 5.7e-29 132.1 233 37.3
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 7.4e-29 131.7 205 40.5
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.3e-28 131.0 220 38.2
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 2.8e-28 129.8 222 39.6
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.1e-27 127.9 233 34.8
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.4e-27 126.7 215 38.1
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.4e-27 126.7 215 38.1
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 3.1e-27 126.3 208 40.9
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 3.1e-27 126.3 237 37.6
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 5.3e-27 125.6 281 36.7
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 9.0e-27 124.8 221 36.2
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 9.0e-27 124.8 239 40.2
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.0e-26 123.6 210 37.6
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 4.5e-26 122.5 206 38.3
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 5.9e-26 122.1 217 39.2
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 7.6e-26 121.7 116 50.9
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.0e-25 121.3 244 35.7
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 1.0e-25 121.3 254 35.4
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.0e-25 121.3 221 38.5
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.3e-25 120.9 244 36.9
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 6.5e-25 118.6 256 35.5
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.1e-24 117.9 239 35.6
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.9e-24 117.1 255 34.5
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 7.2e-24 115.2 253 34.0
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 9.3e-24 114.8 240 35.4
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 9.3e-24 114.8 253 34.0
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 9.3e-24 114.8 253 34.0
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 2.7e-23 113.2 253 33.6
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 6.1e-23 112.1 254 35.0
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 7.9e-23 111.7 255 34.5
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.8e-22 110.5 253 32.8
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.8e-22 110.5 253 32.8
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.3e-22 110.2 250 34.4
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 5.1e-22 109.0 252 33.3
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.5e-21 107.5 234 36.3
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 5.7e-21 105.5 262 33.2
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.3e-20 104.4 195 37.9
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.2e-20 103.6 215 36.3
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 6.3e-20 102.1 212 34.4
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.1e-19 101.3 207 36.7
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 2.4e-19 100.1 250 31.2
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 2.4e-19 100.1 250 31.2
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 4.1e-19 99.4 284 30.6
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 2.6e-18 96.7 217 31.8
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.3e-17 94.4 245 31.4
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.4e-16 90.9 245 32.2
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.4e-16 90.9 245 32.2
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.5e-10 69.3 194 29.4
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.7e-10 68.6 155 29.7
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 7.7e-10 68.6 155 29.7
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.0e-09 68.2 46 56.5
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.7e-09 67.4 172 28.5
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.8e-09 66.2 122 31.1
FvH4_6g23250 Fragaria vesca HOM05D004075 ORTHO05D004538 3.9e-06 56.2 71 42.3
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 6.7e-06 55.5 51 45.1


User provided reference genes

Program Settings