Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 2192.5 1120 100.0
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1641.7 1098 77.2
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1630.2 1069 79.0
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 0.0e+00 1554.7 1108 74.2
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1408.7 1132 65.2
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1377.1 1131 64.5
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1362.8 1130 63.6
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1360.1 1118 64.9
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1347.8 1131 63.2
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1333.5 1129 62.3
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1325.1 1127 62.5
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1324.7 1126 63.0
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1319.3 1138 63.7
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1318.1 1121 62.9
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1317.8 1121 62.9
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 0.0e+00 1309.7 1115 62.3
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1309.3 1120 61.8
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 1306.2 1117 61.8
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1293.1 1118 61.6
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1293.1 1132 60.9
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1290.4 1121 61.0
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1285.8 1132 60.5
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1271.9 1121 59.9
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 0.0e+00 1271.5 1128 60.3
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 0.0e+00 1256.1 1129 60.1
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1248.0 1122 60.0
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1245.7 1128 59.8
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 0.0e+00 1241.5 1118 60.2
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1239.6 1121 59.8
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 0.0e+00 1235.3 1120 58.6
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 0.0e+00 1232.2 1122 58.6
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 0.0e+00 1228.0 1111 59.9
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 0.0e+00 1207.6 1120 57.7
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 0.0e+00 1189.1 1131 58.2
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 0.0e+00 1181.8 1115 58.4
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 0.0e+00 1180.6 1061 59.0
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1172.9 1130 56.6
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1168.3 1126 56.4
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 0.0e+00 1149.8 1129 55.5
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 0.0e+00 1149.0 1128 55.1
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 0.0e+00 1140.2 1119 54.3
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 0.0e+00 1127.1 1130 54.6
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 0.0e+00 1127.1 1130 54.2
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 0.0e+00 1125.9 1123 53.6
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 0.0e+00 1124.8 1130 52.7
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 0.0e+00 1119.0 1121 53.4
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 0.0e+00 1116.7 1126 54.0
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1113.2 944 61.3
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 0.0e+00 1112.4 1115 53.5
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 0.0e+00 1109.7 1144 52.4
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 0.0e+00 1108.2 1132 51.9
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 0.0e+00 1107.8 1142 52.4
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 0.0e+00 1102.8 1148 52.7
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 0.0e+00 1091.6 1112 53.2
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 0.0e+00 1083.9 1118 51.9
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 0.0e+00 1082.8 1164 52.1
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 0.0e+00 1080.9 976 60.3
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 0.0e+00 1075.1 1026 57.1
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 2.7e-307 1058.9 1124 52.0
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 2.1e-304 1049.3 963 60.3
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 3.1e-303 1045.4 1098 52.8
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 7.8e-299 1030.8 1146 48.7
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 2.5e-297 1025.8 1071 53.5
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 4.3e-297 1025.0 1121 51.2
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.1e-295 1020.4 892 59.9
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 9.0e-295 1017.3 970 58.5
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 2.2e-293 1012.7 836 63.2
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.9e-289 999.6 1129 49.9
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 3.4e-286 988.8 990 53.5
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 2.1e-283 979.5 828 62.2
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 1.3e-277 960.3 1166 47.6
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 8.4e-277 957.6 1135 47.8
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 8.4e-277 957.6 1136 48.8
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 6.1e-275 951.4 1128 48.8
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 2.8e-272 942.6 934 54.6
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 6.1e-259 898.3 1126 45.8
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 2.0e-257 893.3 1139 46.0
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 1.4e-255 887.1 1000 48.9
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 3.5e-254 882.5 1117 45.8
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.6e-251 873.6 1120 45.0
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 1.5e-228 797.3 760 56.8
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.9e-220 770.4 794 51.1
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 2.8e-211 740.0 822 51.2
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 3.9e-205 719.5 639 58.7
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 2.2e-192 677.2 727 51.0
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.8e-190 668.7 954 43.6
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 8.1e-179 632.1 1116 37.6
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 4.1e-154 550.1 1179 32.7
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 2.6e-153 547.4 710 45.6
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 2.5e-143 514.2 1380 28.6
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.8e-133 481.5 461 58.1
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 2.5e-127 461.1 444 56.5
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.0e-113 414.8 389 56.8
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 1.5e-111 408.7 369 59.1
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 9.5e-111 406.0 1270 29.5
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 3.0e-109 401.0 356 59.0
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 6.8e-101 373.2 498 44.6
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.3e-99 369.0 323 61.6
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.7e-99 368.6 342 57.3
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.4e-85 322.4 297 56.2
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 1.4e-82 312.4 310 53.2
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 3.3e-79 301.2 297 57.2
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 5.2e-77 293.9 289 53.6
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 1.8e-69 268.9 229 65.1
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.1e-63 249.6 350 43.1
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.9e-55 222.2 261 49.8
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.3e-54 219.5 365 41.1
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 8.7e-48 196.8 191 53.4
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 1.9e-47 195.7 194 53.1
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 2.2e-46 192.2 302 39.7
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 2.4e-45 188.7 202 50.5
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 1.0e-43 183.3 167 56.3
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 1.0e-43 183.3 163 56.4
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 8.5e-43 180.3 505 30.7
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 7.9e-41 173.7 324 38.3
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 8.2e-38 163.7 138 65.2
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 9.1e-37 160.2 480 26.5
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 2.8e-30 138.7 134 59.7
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 6.3e-22 110.9 107 52.3
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 8.2e-22 110.5 98 53.1
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.2e-22 110.5 98 53.1
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.3e-19 103.2 162 43.2
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.5e-18 99.8 137 43.1
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 2.3e-16 92.4 97 56.7
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.8e-16 90.5 135 40.7
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 6.3e-14 84.3 365 25.5
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 8.2e-14 84.0 90 48.9
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.0e-11 77.0 95 42.1
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-10 71.6 270 25.6
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 7.2e-10 70.9 65 50.8
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 3.0e-08 65.5 114 41.2
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 2.2e-06 59.3 42 69.0


User provided reference genes

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