Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 0.0e+00 1318.9 660 100.0
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 0.0e+00 1127.1 660 83.8
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 1.7e-309 1065.4 660 79.5
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 7.2e-284 980.3 660 73.3
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.3e-277 959.5 659 71.9
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 1.6e-275 952.6 660 71.7
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 2.7e-275 951.8 659 71.3
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 7.4e-273 943.7 659 71.3
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 2.2e-272 942.2 658 70.5
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 1.4e-271 939.5 659 70.4
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 1.6e-270 936.0 660 71.2
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 2.0e-270 935.6 660 71.1
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 4.5e-270 934.5 659 70.3
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 8.5e-269 930.2 658 69.5
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 3.6e-267 924.9 660 69.7
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 2.6e-265 918.7 659 69.2
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 3.3e-265 918.3 659 69.0
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 2.2e-264 915.6 707 66.1
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 2.8e-264 915.2 659 68.9
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.4e-263 912.9 659 68.9
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 7.0e-263 910.6 659 68.4
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 7.0e-263 910.6 661 69.0
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.9e-262 907.5 661 68.7
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.7e-262 907.1 662 68.4
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 1.0e-261 906.7 914 56.3
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 4.8e-256 887.9 661 67.0
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 2.4e-255 885.6 661 66.9
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 4.5e-254 881.3 662 66.2
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 7.7e-254 880.6 661 66.4
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 1.7e-253 879.4 661 66.6
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 3.4e-249 865.1 659 65.7
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 7.5e-249 864.0 658 65.2
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 8.3e-248 860.5 661 65.7
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 8.3e-248 860.5 661 66.0
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 2.4e-247 859.0 587 72.1
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 1.2e-246 856.7 662 66.5
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 3.5e-246 855.1 690 63.0
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 4.5e-246 854.7 660 65.3
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 6.6e-245 850.9 659 64.6
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 4.7e-243 844.7 662 65.1
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 6.1e-243 844.3 664 64.9
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 4.6e-238 828.2 665 63.9
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 1.0e-237 827.0 657 63.9
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.5e-236 822.4 660 63.6
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.5e-236 822.4 658 63.8
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 1.2e-235 820.1 660 63.0
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 4.7e-235 818.1 576 69.6
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 3.1e-234 815.5 643 64.1
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 4.4e-233 811.6 662 62.8
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 2.2e-232 809.3 662 63.3
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 4.9e-232 808.1 658 63.5
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 1.1e-231 807.0 662 63.1
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 1.6e-230 803.1 662 62.4
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 6.6e-229 797.7 659 63.3
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 1.1e-228 797.0 659 63.1
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 1.5e-228 796.6 660 62.1
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 4.3e-228 795.0 662 61.6
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 5.6e-228 794.7 663 61.7
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 8.1e-227 790.8 661 62.2
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 8.1e-227 790.8 660 61.2
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 1.1e-226 790.4 662 61.5
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 4.0e-226 788.5 662 60.4
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 8.9e-226 787.3 662 60.7
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 1.2e-225 786.9 662 61.5
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 1.2e-225 786.9 684 61.1
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 2.6e-225 785.8 523 74.4
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 2.6e-225 785.8 659 60.4
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 5.8e-225 784.6 660 60.9
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 7.5e-225 784.3 660 61.1
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 7.5e-225 784.3 660 61.4
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.3e-224 783.5 665 60.5
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 2.9e-224 782.3 665 61.1
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 6.4e-224 781.2 670 60.1
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 8.3e-224 780.8 662 61.8
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 1.4e-223 780.0 654 60.6
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 1.9e-223 779.6 660 60.6
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 2.1e-222 776.2 662 59.4
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 7.8e-222 774.2 662 61.2
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 1.3e-221 773.5 597 65.3
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 2.3e-221 772.7 588 66.7
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 8.6e-221 770.8 663 61.2
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 8.1e-219 764.2 660 59.8
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 1.4e-218 763.5 664 60.5
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.4e-218 763.5 662 58.8
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 1.8e-218 763.1 663 60.5
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 1.8e-218 763.1 663 60.5
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 6.8e-218 761.1 662 59.1
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 8.9e-218 760.8 663 60.0
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 1.5e-217 760.0 665 60.6
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 7.1e-215 751.1 659 60.1
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 9.2e-215 750.7 660 57.9
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 1.7e-213 746.5 667 57.6
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 8.6e-213 744.2 670 58.2
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.8e-211 739.2 639 59.3
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 9.6e-204 714.1 669 56.2
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 5.3e-202 708.4 659 56.8
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 4.5e-201 705.3 605 60.8
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 7.6e-201 704.5 731 52.4
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 7.4e-196 688.0 657 56.0
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.9e-192 676.0 660 55.8
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 7.9e-190 667.9 483 71.0
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 5.6e-188 661.8 668 53.9
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 2.5e-180 636.3 668 52.2
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 4.5e-177 625.5 565 57.2
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.5e-172 609.8 525 58.9
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 4.2e-167 592.4 662 52.0
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 1.0e-165 587.8 659 49.0
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 3.3e-164 582.8 640 51.6
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.4e-162 577.4 657 49.9
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 5.3e-154 548.9 539 54.9
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 7.7e-153 545.0 637 47.6
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 1.5e-127 461.1 708 42.8
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 5.4e-122 442.6 668 41.9
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 4.4e-116 422.9 521 46.3
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.4e-114 417.9 404 54.5
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 9.2e-114 415.2 524 46.6
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 1.4e-109 401.4 469 49.3
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 8.4e-91 339.0 347 54.5
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.7e-88 331.3 308 54.9
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 7.1e-66 256.1 375 40.5
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 2.4e-61 241.1 539 32.1
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 1.9e-58 231.5 189 58.7
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.8e-56 224.9 227 49.8
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.8e-56 224.9 227 49.8
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 6.9e-53 213.0 450 33.1
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 9.1e-53 212.6 632 29.1
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.5e-51 206.5 147 67.3
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 1.7e-43 181.8 159 57.2
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 9.7e-31 139.4 104 74.0
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.4e-21 109.0 430 27.7
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 1.8e-21 108.6 176 40.3
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 3.5e-20 104.4 102 45.1
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 8.6e-19 99.8 78 65.4
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 1.2e-15 89.4 65 64.6
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 9.8e-15 86.3 72 63.9
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.4e-13 82.4 67 61.2
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 4.1e-13 80.9 67 61.2
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 1.8e-08 65.5 59 49.2
C05p29450 Brassica napus HOM05D005077 ORTHO05D018175 2.0e-07 62.0 63 47.6
BolC5t31675H Brassica oleracea HOM05D005077 ORTHO05D018175 2.0e-07 62.0 63 47.6


User provided reference genes

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