Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 5.8e-89 330.9 168 100.0
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.4e-50 203.4 133 84.2
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 2.2e-35 152.9 130 71.5
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 6.5e-32 141.4 130 63.8
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 2.5e-31 139.4 131 64.1
QL02p054616 Quercus lobata HOM05D000017 ORTHO05D004912 4.5e-25 118.6 71 90.1
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 1.9e-23 113.2 130 55.4
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.7e-22 109.4 130 53.8
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 4.7e-22 108.6 130 52.3
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.7e-22 108.6 130 52.3
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 4.7e-22 108.6 127 56.7
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 8.0e-22 107.8 130 54.6
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 1.8e-21 106.7 131 51.9
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.0e-21 105.5 128 53.9
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 6.8e-21 104.8 131 51.9
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 6.8e-21 104.8 131 51.9
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.5e-20 103.6 129 52.7
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.0e-20 103.2 130 52.3
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 2.6e-20 102.8 127 52.8
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.4e-20 102.4 130 52.3
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 3.4e-20 102.4 137 50.4
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 5.7e-20 101.7 119 56.3
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 9.8e-20 100.9 128 53.1
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 1.3e-19 100.5 128 51.6
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 2.8e-19 99.4 106 56.6
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 2.8e-19 99.4 109 56.9
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 1.1e-18 97.4 109 57.8
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 1.1e-18 97.4 100 57.0
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 1.8e-18 96.7 128 53.1
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 3.1e-18 95.9 131 48.9
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 4.1e-18 95.5 128 46.1
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 9.2e-18 94.4 128 52.3
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 9.2e-18 94.4 110 54.5
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 9.2e-18 94.4 139 48.9
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 9.2e-18 94.4 133 51.9
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.6e-17 93.6 128 53.1
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 2.7e-17 92.8 132 47.7
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 2.7e-17 92.8 127 53.5
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 4.5e-17 92.0 128 47.7
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 1.3e-16 90.5 126 50.8
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 2.3e-16 89.7 129 48.1
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 2.3e-16 89.7 130 48.5
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 2.9e-16 89.4 128 47.7
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 2.9e-16 89.4 131 47.3
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 5.0e-16 88.6 128 47.7
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 5.0e-16 88.6 124 50.8
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.1e-15 87.4 132 49.2
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 1.9e-15 86.7 125 46.4
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.6e-15 85.1 129 47.3
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 5.6e-15 85.1 127 47.2
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 9.5e-15 84.3 128 45.3
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 1.6e-14 83.6 122 45.9
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.6e-14 83.6 129 45.0
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 1.6e-14 83.6 137 43.1
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 1.6e-14 83.6 107 54.2
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.0e-13 80.9 124 44.4
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 1.4e-13 80.5 113 47.8
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.2e-13 78.6 109 46.8
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 5.2e-13 78.6 123 43.9
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 6.8e-13 78.2 125 47.2
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 8.9e-13 77.8 129 45.0
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 1.5e-12 77.0 126 43.7
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 2.6e-12 76.3 131 46.6
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 2.6e-12 76.3 131 46.6
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 2.6e-12 76.3 115 42.6
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 7.5e-12 74.7 125 44.8
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 2.9e-11 72.8 114 44.7
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 2.9e-11 72.8 118 39.8
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 2.9e-11 72.8 108 47.2
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 3.7e-11 72.4 126 46.0
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.7e-11 72.4 109 45.9
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 6.4e-11 71.6 122 43.4
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 8.3e-11 71.2 126 46.8
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 8.3e-11 71.2 109 43.1
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.1e-10 70.9 115 43.5
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 1.1e-10 70.9 129 44.2
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 1.4e-10 70.5 116 44.0
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 1.8e-10 70.1 91 49.5
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 1.8e-10 70.1 112 47.3
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 3.2e-10 69.3 106 46.2
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 7.0e-10 68.2 111 43.2
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 7.0e-10 68.2 109 45.0
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 9.2e-10 67.8 91 49.5
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 1.2e-09 67.4 110 40.9
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 1.6e-09 67.0 108 44.4
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.0e-09 66.6 91 46.2
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 2.7e-09 66.2 105 44.8
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.7e-09 66.2 91 46.2
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 2.7e-09 66.2 91 46.2
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 2.7e-09 66.2 116 43.1
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 3.5e-09 65.9 98 44.9
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 3.5e-09 65.9 132 38.6
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 3.5e-09 65.9 124 42.7
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 4.6e-09 65.5 114 46.5
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.0e-08 64.3 126 39.7
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.3e-08 63.9 109 45.9
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 2.3e-08 63.2 111 44.1
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 2.3e-08 63.2 121 43.0
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 3.0e-08 62.8 111 45.0
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 3.0e-08 62.8 122 41.0
Migut.H01572 Erythranthe guttata HOM05D011575 ORTHO05D004912 5.0e-08 62.0 108 39.8
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 5.0e-08 62.0 99 40.4
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 6.6e-08 61.6 112 41.1
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 6.6e-08 61.6 116 43.1
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 8.6e-08 61.2 112 42.0
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 8.6e-08 61.2 112 42.9
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 8.6e-08 61.2 103 40.8
AUR62015784 Chenopodium quinoa HOM05D007398 ORTHO05D004912 1.5e-07 60.5 95 43.2
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 1.9e-07 60.1 95 42.1
FAN21G2105 Fragaria x ananassa HOM05D011727 ORTHO05D004912 1.9e-07 60.1 103 42.7
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 3.3e-07 59.3 114 44.7
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 3.3e-07 59.3 112 41.1
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 3.3e-07 59.3 114 44.7
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 3.3e-07 59.3 119 42.0
FvH4_3g02050 Fragaria vesca HOM05D011727 ORTHO05D004912 3.3e-07 59.3 103 42.7
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 4.3e-07 58.9 111 42.3
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 4.3e-07 58.9 116 41.4
FAN25G2989 Fragaria x ananassa HOM05D011727 ORTHO05D004912 4.3e-07 58.9 104 40.4
RcHm_v2.0_Chr5g0002951 Rosa chinensis HOM05D011727 ORTHO05D004912 4.3e-07 58.9 98 41.8
SalBow8G3401 Salvia bowleyana HOM05D011575 ORTHO05D004912 4.3e-07 58.9 118 40.7
Zm00001eb273730 Zea mays HOM05D007398 ORTHO05D004912 4.3e-07 58.9 127 37.0
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 5.6e-07 58.5 114 44.7
Glyma.14G163600 Glycine max HOM05D011727 ORTHO05D004912 5.6e-07 58.5 98 43.9
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 5.6e-07 58.5 127 40.2
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 7.3e-07 58.2 116 44.0
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 6.2e-06 55.1 103 45.6
Lj1g0009560 Lotus japonicus HOM05D011727 ORTHO05D004912 6.2e-06 55.1 105 40.0
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 8.0e-06 54.7 88 39.8


User provided reference genes

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