Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 1.7e-252 875.5 438 100.0
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 3.1e-206 721.8 438 81.7
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 4.3e-192 674.9 430 77.4
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 4.9e-188 661.4 422 76.5
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 1.8e-182 642.9 419 77.6
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 6.8e-182 641.0 409 76.8
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 2.0e-181 639.4 420 75.2
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 2.9e-180 635.6 415 75.4
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 4.2e-179 631.7 400 75.8
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.1e-178 629.4 410 74.4
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 2.1e-178 629.4 402 75.4
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 3.5e-178 628.6 414 74.4
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 4.6e-178 628.2 428 73.1
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 2.3e-177 625.9 406 73.4
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 6.6e-177 624.4 409 75.6
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 1.9e-176 622.9 397 74.8
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 1.9e-176 622.9 409 74.8
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 3.3e-176 622.1 414 72.0
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 1.6e-175 619.8 390 75.1
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 6.2e-175 617.8 413 74.3
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 1.1e-174 617.1 394 74.9
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 2.4e-174 615.9 418 72.5
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 6.9e-174 614.4 438 68.7
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 9.0e-174 614.0 410 72.0
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 3.4e-173 612.1 448 68.3
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 5.8e-173 611.3 401 72.1
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 4.9e-172 608.2 424 71.0
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 8.4e-172 607.4 403 73.2
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 1.1e-171 607.1 411 71.0
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 2.4e-171 605.9 425 68.9
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 9.3e-171 604.0 399 72.4
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 1.6e-170 603.2 428 70.1
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 1.6e-170 603.2 434 68.4
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 4.6e-170 601.7 391 73.1
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 4.6e-170 601.7 394 73.9
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 6.0e-170 601.3 438 69.4
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 1.0e-169 600.5 423 70.0
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.7e-169 599.7 418 70.1
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 3.0e-169 599.0 419 70.6
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 6.6e-169 597.8 392 74.2
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 8.7e-169 597.4 398 74.4
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 1.1e-168 597.0 516 62.2
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 7.3e-168 594.3 423 69.0
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 9.6e-168 594.0 489 63.2
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 2.8e-167 592.4 390 72.6
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 2.8e-167 592.4 391 73.4
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 2.8e-167 592.4 439 67.9
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 4.8e-167 591.7 414 71.0
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 6.2e-167 591.3 414 71.0
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.1e-166 590.5 414 70.8
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 6.9e-166 587.8 392 72.7
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 9.0e-166 587.4 407 70.3
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 7.6e-165 584.3 403 71.0
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 4.2e-163 578.6 423 67.8
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 5.4e-163 578.2 436 66.1
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 2.7e-162 575.9 434 66.6
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 4.6e-162 575.1 422 65.6
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 7.9e-162 574.3 399 67.7
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 3.0e-161 572.4 426 67.6
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 8.7e-161 570.9 395 70.4
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 2.5e-160 569.3 401 69.8
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 7.4e-160 567.8 391 69.1
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 7.4e-160 567.8 415 67.0
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 2.8e-159 565.8 397 70.0
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 6.2e-159 564.7 390 68.5
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 8.1e-159 564.3 409 68.2
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 8.1e-159 564.3 398 68.3
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 3.1e-158 562.4 397 69.3
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 3.1e-158 562.4 398 68.1
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 7.6e-157 557.8 390 68.2
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 7.6e-157 557.8 396 69.7
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 7.6e-157 557.8 396 69.7
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 1.3e-156 557.0 399 68.9
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 1.3e-156 557.0 413 67.3
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 4.9e-156 555.1 425 64.0
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 4.2e-155 552.0 392 67.9
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 1.2e-154 550.4 400 67.5
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 7.9e-154 547.7 478 59.0
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 5.1e-153 545.0 438 63.0
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 9.6e-152 540.8 394 67.3
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 1.2e-149 533.9 456 62.3
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 1.0e-148 530.8 449 59.5
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 5.5e-147 525.0 365 70.1
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 1.1e-144 517.3 399 65.4
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.8e-143 512.7 328 74.4
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 2.8e-143 512.7 403 64.3
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 5.5e-139 498.4 331 72.2
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 7.2e-139 498.0 363 66.9
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 1.2e-133 480.7 279 83.5
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 4.5e-133 478.8 328 72.3
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.3e-132 477.2 328 72.3
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.6e-130 470.3 329 67.5
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 6.7e-129 464.9 392 58.9
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 7.4e-128 461.5 311 70.7
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 4.5e-125 452.2 398 56.0
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 8.0e-122 441.4 347 64.3
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.1e-115 421.0 400 53.0
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 4.0e-113 412.5 359 59.9
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 1.2e-112 411.0 310 66.5
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 3.2e-107 392.9 377 52.8
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 2.7e-106 389.8 409 50.4
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 4.4e-104 382.5 289 64.7
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 1.4e-102 377.5 446 49.3
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 3.1e-102 376.3 287 65.2
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 4.1e-102 375.9 287 65.2
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 5.4e-94 349.0 241 70.5
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 5.4e-94 349.0 213 75.6
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 5.0e-92 342.4 240 67.9
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.3e-84 317.8 237 64.6
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 1.1e-83 314.7 469 40.9
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 7.8e-77 292.0 351 47.3
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 6.6e-76 288.9 191 70.2
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 1.3e-60 238.0 172 68.0
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 3.3e-59 233.4 148 75.7
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 2.9e-55 220.3 157 68.8
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 4.2e-54 216.5 165 66.1
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.1e-53 214.2 402 37.6
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.0e-52 211.8 172 61.6
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 1.1e-51 208.4 278 43.5
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 3.3e-51 206.8 145 67.6
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 1.6e-37 161.4 434 29.7
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.6e-37 161.4 120 65.0
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 4.6e-37 159.8 431 29.7
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 5.1e-36 156.4 437 29.3
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 3.3e-35 153.7 424 30.0
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 6.3e-34 149.4 414 30.2
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 2.1e-29 134.4 90 67.8
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 7.4e-27 125.9 235 37.4
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 6.3e-26 122.9 78 67.9
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 1.2e-24 118.6 113 51.3
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.7e-23 114.8 77 67.5
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 1.1e-22 112.1 402 27.4
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 2.1e-21 107.8 63 77.8
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 3.6e-21 107.1 90 64.4
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 6.9e-17 92.8 88 55.7
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 1.9e-14 84.7 53 69.8
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 4.7e-13 80.1 76 51.3
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 1.3e-07 62.0 37 83.8


User provided reference genes

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