Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p015392 Quercus lobata HOM05D007667 ORTHO05D008033 4.6e-186 654.4 335 100.0
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 7.2e-107 391.3 345 66.1
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 5.7e-104 381.7 365 62.2
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 5.0e-84 315.5 294 63.3
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 1.2e-80 304.3 378 50.5
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 1.9e-78 297.0 365 51.2
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 9.2e-78 294.7 351 51.0
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 1.6e-77 293.9 360 50.8
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 3.9e-76 289.3 362 51.1
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 4.3e-75 285.8 366 50.8
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 2.8e-74 283.1 366 50.5
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 3.6e-74 282.7 361 47.1
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 4.7e-74 282.3 359 50.4
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 2.3e-73 280.0 355 51.8
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 4.0e-73 279.3 362 49.4
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 5.8e-72 275.4 369 50.1
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 5.8e-72 275.4 351 49.0
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 1.6e-69 267.3 403 46.7
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 1.0e-68 264.6 412 46.8
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 3.9e-68 262.7 361 52.9
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 1.2e-66 257.7 361 51.0
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 1.8e-65 253.8 357 50.4
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 2.0e-64 250.4 327 48.9
TAR623G0652 Trochodendron aralioides HOM05D007667 ORTHO05D008033 4.1e-62 242.7 403 43.2
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 1.0e-60 238.0 362 47.8
TWI77G1010 Tripterygium wilfordii HOM05D007667 ORTHO05D008033 4.3e-59 232.6 365 44.7
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 9.3e-54 214.9 407 40.5
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 5.1e-52 209.1 358 41.9
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 8.7e-52 208.4 337 43.6
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 1.9e-51 207.2 359 44.8
Sc13g0000730 Simmondsia chinensis HOM05D007667 ORTHO05D008033 2.5e-51 206.8 486 36.8
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 3.6e-50 203.0 287 48.4
Cc06_g20370 Coffea canephora HOM05D007667 ORTHO05D008033 1.8e-49 200.7 374 40.4
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 4.0e-49 199.5 367 41.1
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 3.4e-48 196.4 378 39.9
MBI13_g29622_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 2.2e-47 193.7 389 40.6
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 2.2e-47 193.7 356 39.9
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 4.6e-45 186.0 384 39.1
Hund19052 Selenicereus undatus HOM05D007667 ORTHO05D008033 1.3e-44 184.5 417 38.4
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 2.3e-44 183.7 344 39.5
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 4.3e-43 179.5 336 38.4
Cfa010473 Carpinus fangiana HOM05D007667 ORTHO05D008033 2.1e-42 177.2 171 64.9
Aqoxy3G03841 Aquilegia oxysepala HOM05D007667 ORTHO05D008033 6.2e-42 175.6 365 38.4
ClCG04G005020 Citrullus lanatus HOM05D007667 ORTHO05D008033 4.0e-41 172.9 421 36.1
Sed0012185 Sechium edule HOM05D007667 ORTHO05D008033 2.6e-40 170.2 416 36.5
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 3.4e-40 169.9 272 42.6
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 5.8e-40 169.1 405 36.5
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 1.3e-39 167.9 491 31.8
Ca_08329_v3 Cicer arietinum L. HOM05D007667 ORTHO05D008033 4.2e-38 162.9 250 46.4
Prupe.7G023900 Prunus persica HOM05D007667 ORTHO05D008033 5.5e-38 162.5 243 49.0
CsaV3_4G028970 Cucumis sativus L. HOM05D007667 ORTHO05D008033 7.1e-38 162.2 420 35.7
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 1.2e-37 161.4 397 36.5
Lj1A1064T35 Lonicera japonica HOM05D007667 ORTHO05D008033 4.6e-37 159.5 244 46.3
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 6.0e-37 159.1 339 38.3
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 3.0e-36 156.8 401 35.9
Nitab4.5_0002201g0030 Nicotiana tabacum HOM05D007667 ORTHO05D008033 3.3e-35 153.3 338 35.5
Dinv02787 Davidia involucrata HOM05D007667 ORTHO05D008033 3.8e-31 139.8 264 44.3
Ah.13g077440 Amaranthus hybridus HOM05D007667 ORTHO05D008033 5.5e-30 136.0 407 33.2
PSO384G0308 Papaver somniferum HOM05D007667 ORTHO05D008033 5.5e-30 136.0 457 30.6
ClCG10G016970 Citrullus lanatus HOM05D007667 ORTHO05D008033 9.3e-30 135.2 253 38.7
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.7e-29 133.7 336 36.3
PSO339G5815 Papaver somniferum HOM05D007667 ORTHO05D008033 4.6e-29 132.9 462 29.7
EL10Ac3g07362 Beta vulgaris HOM05D007667 ORTHO05D008033 2.3e-28 130.6 383 31.9
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 7.4e-27 125.6 488 28.1
HPP92_012452 Vanilla planifolia HOM05D007667 ORTHO05D008033 2.8e-26 123.6 375 32.8
Lalb_Chr22g0358171 Lupinus albus HOM05D007667 ORTHO05D008033 6.3e-26 122.5 266 39.1
Sed0023543 Sechium edule HOM05D007667 ORTHO05D008033 4.1e-25 119.8 363 31.1
Lalb_Chr22g0358161 Lupinus albus HOM05D007667 ORTHO05D008033 3.4e-24 116.7 102 55.9
arahy.Tifrunner.gnm1.ann1.EU10QV Arachis hypogaea HOM05D007667 ORTHO05D008033 5.9e-24 115.9 187 45.5
arahy.Tifrunner.gnm1.ann1.8XR3F9 Arachis hypogaea HOM05D007667 ORTHO05D008033 1.0e-23 115.2 187 45.5
Solyc08g067000.3 Solanum lycopersicum HOM05D007667 ORTHO05D008033 1.1e-22 111.7 340 30.9
ATR1096G118 Amborella trichopoda HOM05D007667 ORTHO05D008033 3.2e-22 110.2 419 30.5
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 2.7e-21 107.1 158 41.8
Actinidia37860 Actinidia chinensis HOM05D007667 ORTHO05D008033 8.8e-20 102.1 351 31.3
MELO3C030720.2 Cucumis melo HOM05D007667 ORTHO05D008033 8.8e-20 102.1 377 29.2
PGSC0003DMG400029088 Solanum tuberosum HOM05D007667 ORTHO05D008033 8.8e-20 102.1 314 30.9
Sopen08g020950 Solanum pennellii HOM05D007667 ORTHO05D008033 1.1e-19 101.7 333 30.3
CDE02G4005 Ceratophyllum demersum HOM05D000558 ORTHO05D008033 6.9e-17 92.4 297 27.3
CsaV3_3G039420 Cucumis sativus L. HOM05D007667 ORTHO05D008033 6.9e-17 92.4 382 28.5
arahy.Tifrunner.gnm1.ann1.8931ZB Arachis hypogaea HOM05D007667 ORTHO05D008033 7.7e-16 89.0 157 43.9
MBI13_g08647_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 2.2e-15 87.4 123 45.5
arahy.Tifrunner.gnm1.ann1.3W78Z9 Arachis hypogaea HOM05D007667 ORTHO05D008033 6.5e-15 85.9 157 43.3
Dinv21555 Davidia involucrata HOM05D007667 ORTHO05D008033 2.1e-13 80.9 89 58.4
CDE04G0047 Ceratophyllum demersum HOM05D007667 ORTHO05D008033 1.8e-12 77.8 398 24.9
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 8.8e-12 75.5 85 58.8
unitig_744.g24157 Utricularia gibba HOM05D007667 ORTHO05D008033 8.8e-12 75.5 189 36.0
arahy.Tifrunner.gnm1.ann1.NYTL45 Arachis hypogaea HOM05D007667 ORTHO05D008033 3.3e-11 73.6 92 53.3
HPP92_014340 Vanilla planifolia HOM05D007667 ORTHO05D008033 3.3e-11 73.6 181 34.3
arahy.Tifrunner.gnm1.ann1.S7MPKE Arachis hypogaea HOM05D007667 ORTHO05D008033 7.4e-11 72.4 142 41.5
arahy.Tifrunner.gnm1.ann1.48UEJW Arachis hypogaea HOM05D007667 ORTHO05D008033 1.7e-10 71.2 146 40.4
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 2.2e-10 70.9 220 28.6
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 4.8e-10 69.7 239 25.5
arahy.Tifrunner.gnm1.ann1.W45WAC Arachis hypogaea HOM05D007667 ORTHO05D008033 6.3e-10 69.3 88 51.1
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 8.2e-10 68.9 234 25.2
Os03g0319200 Oryza sativa ssp. japonica HOM05D043175 ORTHO05D008033 3.1e-09 67.0 188 33.0
Cpa.g.sc33.176 Carica papaya HOM05D007667 ORTHO05D008033 4.1e-09 66.6 226 32.3
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 9.1e-09 65.5 248 24.6
MELO3C019169.2 Cucumis melo HOM05D007667 ORTHO05D008033 9.1e-09 65.5 82 40.2
MBI13_g08646_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 9.1e-09 65.5 65 49.2
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 1.5e-08 64.7 226 23.9
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 2.0e-08 64.3 247 25.1
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 2.0e-08 64.3 247 25.1
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 2.0e-08 64.3 250 24.4
AUR62020980 Chenopodium quinoa HOM05D007667 ORTHO05D008033 2.6e-08 63.9 71 46.5
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 5.9e-08 62.8 199 29.1
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 3.8e-07 60.1 88 35.2
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 5.0e-07 59.7 231 26.0
MBI13_g31583_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 5.0e-07 59.7 128 45.3
Ah.04g150340 Amaranthus hybridus HOM05D003123 ORTHO05D003492 8.5e-07 58.9 125 38.4
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 1.1e-06 58.5 233 26.2
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 1.4e-06 58.2 233 26.6
C08p32040 Brassica napus HOM05D009749 ORTHO05D008033 1.4e-06 58.2 273 26.0
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 2.5e-06 57.4 238 25.2
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 3.2e-06 57.0 273 23.4
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 3.2e-06 57.0 273 23.4
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 4.2e-06 56.6 223 27.8
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 4.2e-06 56.6 223 27.8
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 5.5e-06 56.2 234 25.2
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 9.4e-06 55.5 234 24.4


User provided reference genes

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